Hb_005928_070

Information

Type -
Description -
Location Contig5928: 75130-75481
Sequence    

Annotation

kegg
ID pop:POPTR_0002s04520g
description POPTRDRAFT_830089; hypothetical protein
nr
ID XP_002300801.2
description hypothetical protein POPTR_0002s04520g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GS65
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s04520g PE=4 SV=2
Gene Ontology
ID GO:0044237
description photosystem ii reaction center w chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50310: 75241-75807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005928_070 0.0 - - hypothetical protein POPTR_0002s04520g [Populus trichocarpa]
2 Hb_001712_080 0.1728639293 - - -
3 Hb_059978_010 0.1871752374 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
4 Hb_002379_040 0.2490357215 - - -
5 Hb_006995_010 0.256891898 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
6 Hb_000289_080 0.2618496206 - - conserved hypothetical protein [Ricinus communis]
7 Hb_120052_010 0.2631757776 - - hypothetical protein PRUPE_ppa1027171mg [Prunus persica]
8 Hb_002918_190 0.2651812097 - - Uncharacterized protein TCM_029816 [Theobroma cacao]
9 Hb_000085_130 0.2653109425 - - -
10 Hb_000084_130 0.2661781342 - - -
11 Hb_000668_020 0.2680898941 - - -
12 Hb_000789_150 0.2697460818 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
13 Hb_008096_020 0.2733669398 - - -
14 Hb_000876_010 0.2741244374 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
15 Hb_095192_010 0.2752973797 - - hypothetical protein VITISV_043980 [Vitis vinifera]
16 Hb_001222_040 0.2782090115 - - -
17 Hb_002291_040 0.2784103411 - - hypothetical protein VITISV_030841 [Vitis vinifera]
18 Hb_012675_080 0.2785047735 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
19 Hb_005542_090 0.2786246987 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
20 Hb_007083_020 0.2829436189 - - hypothetical protein F775_15403 [Aegilops tauschii]

Gene co-expression network

sample Hb_005928_070 Hb_005928_070 Hb_001712_080 Hb_001712_080 Hb_005928_070--Hb_001712_080 Hb_059978_010 Hb_059978_010 Hb_005928_070--Hb_059978_010 Hb_002379_040 Hb_002379_040 Hb_005928_070--Hb_002379_040 Hb_006995_010 Hb_006995_010 Hb_005928_070--Hb_006995_010 Hb_000289_080 Hb_000289_080 Hb_005928_070--Hb_000289_080 Hb_120052_010 Hb_120052_010 Hb_005928_070--Hb_120052_010 Hb_002918_190 Hb_002918_190 Hb_001712_080--Hb_002918_190 Hb_001712_080--Hb_059978_010 Hb_001712_080--Hb_006995_010 Hb_005542_090 Hb_005542_090 Hb_001712_080--Hb_005542_090 Hb_007083_020 Hb_007083_020 Hb_001712_080--Hb_007083_020 Hb_021888_040 Hb_021888_040 Hb_059978_010--Hb_021888_040 Hb_013394_100 Hb_013394_100 Hb_059978_010--Hb_013394_100 Hb_059978_010--Hb_002379_040 Hb_002079_040 Hb_002079_040 Hb_059978_010--Hb_002079_040 Hb_002379_040--Hb_021888_040 Hb_011200_010 Hb_011200_010 Hb_002379_040--Hb_011200_010 Hb_000668_020 Hb_000668_020 Hb_002379_040--Hb_000668_020 Hb_012675_080 Hb_012675_080 Hb_002379_040--Hb_012675_080 Hb_003551_010 Hb_003551_010 Hb_002379_040--Hb_003551_010 Hb_003656_150 Hb_003656_150 Hb_006995_010--Hb_003656_150 Hb_006995_010--Hb_000289_080 Hb_003029_100 Hb_003029_100 Hb_006995_010--Hb_003029_100 Hb_006995_010--Hb_012675_080 Hb_000086_190 Hb_000086_190 Hb_006995_010--Hb_000086_190 Hb_006198_090 Hb_006198_090 Hb_006995_010--Hb_006198_090 Hb_000289_080--Hb_003029_100 Hb_000289_080--Hb_000086_190 Hb_000204_020 Hb_000204_020 Hb_000289_080--Hb_000204_020 Hb_000289_080--Hb_000668_020 Hb_000289_080--Hb_003656_150 Hb_075745_010 Hb_075745_010 Hb_120052_010--Hb_075745_010 Hb_120052_010--Hb_000289_080 Hb_120052_010--Hb_003029_100 Hb_120052_010--Hb_000668_020 Hb_120052_010--Hb_002379_040 Hb_120052_010--Hb_002918_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.320113 2.51049 0.576546 3.7735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.440015 0.694414 0 0 0

CAGE analysis