Hb_005928_080

Information

Type -
Description -
Location Contig5928: 76108-87684
Sequence    

Annotation

kegg
ID rcu:RCOM_0992220
description Glycosyltransferase QUASIMODO1, putative
nr
ID XP_012092101.1
description PREDICTED: probable galacturonosyltransferase 6 isoform X1 [Jatropha curcas]
swissprot
ID Q9M9Y5
description Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana GN=GAUT6 PE=2 SV=1
trembl
ID A0A067JMW7
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_21831 PE=3 SV=1
Gene Ontology
ID GO:0000139
description probable galacturonosyltransferase 6 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50312: 83518-83915 , PASA_asmbl_50313: 84592-86880
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005928_080 0.0 - - PREDICTED: probable galacturonosyltransferase 6 isoform X1 [Jatropha curcas]
2 Hb_005271_080 0.1475659063 - - receptor kinase, putative [Ricinus communis]
3 Hb_051017_010 0.1677834881 - - Uncharacterized protein TCM_031047 [Theobroma cacao]
4 Hb_001247_170 0.1743059047 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
5 Hb_001279_330 0.1788331037 - - Protein bem46, putative [Ricinus communis]
6 Hb_000261_520 0.1791430431 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
7 Hb_000175_490 0.1809763262 - - PREDICTED: probable polygalacturonase At1g80170 isoform X1 [Jatropha curcas]
8 Hb_005368_010 0.1812245718 - - PREDICTED: umecyanin-like [Jatropha curcas]
9 Hb_099698_010 0.1830410074 - - -
10 Hb_000832_200 0.1857465038 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
11 Hb_007111_040 0.187982756 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
12 Hb_000988_050 0.1921198597 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000755_080 0.1927373813 - - hypothetical protein RCOM_1016710 [Ricinus communis]
14 Hb_006483_010 0.1930588837 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_023226_060 0.1939468675 - - unnamed protein product [Vitis vinifera]
16 Hb_015026_060 0.1942297688 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
17 Hb_000940_040 0.19429874 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
18 Hb_000215_260 0.1968061348 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
19 Hb_000210_130 0.1968763219 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
20 Hb_007441_070 0.1969598891 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]

Gene co-expression network

sample Hb_005928_080 Hb_005928_080 Hb_005271_080 Hb_005271_080 Hb_005928_080--Hb_005271_080 Hb_051017_010 Hb_051017_010 Hb_005928_080--Hb_051017_010 Hb_001247_170 Hb_001247_170 Hb_005928_080--Hb_001247_170 Hb_001279_330 Hb_001279_330 Hb_005928_080--Hb_001279_330 Hb_000261_520 Hb_000261_520 Hb_005928_080--Hb_000261_520 Hb_000175_490 Hb_000175_490 Hb_005928_080--Hb_000175_490 Hb_005271_080--Hb_001279_330 Hb_005368_010 Hb_005368_010 Hb_005271_080--Hb_005368_010 Hb_000424_230 Hb_000424_230 Hb_005271_080--Hb_000424_230 Hb_001689_020 Hb_001689_020 Hb_005271_080--Hb_001689_020 Hb_000197_210 Hb_000197_210 Hb_005271_080--Hb_000197_210 Hb_005271_080--Hb_000261_520 Hb_002582_070 Hb_002582_070 Hb_051017_010--Hb_002582_070 Hb_051017_010--Hb_001247_170 Hb_184134_010 Hb_184134_010 Hb_051017_010--Hb_184134_010 Hb_005271_020 Hb_005271_020 Hb_051017_010--Hb_005271_020 Hb_003580_030 Hb_003580_030 Hb_051017_010--Hb_003580_030 Hb_002687_040 Hb_002687_040 Hb_001247_170--Hb_002687_040 Hb_001584_370 Hb_001584_370 Hb_001247_170--Hb_001584_370 Hb_014361_100 Hb_014361_100 Hb_001247_170--Hb_014361_100 Hb_001247_170--Hb_005271_080 Hb_000042_270 Hb_000042_270 Hb_001247_170--Hb_000042_270 Hb_000497_230 Hb_000497_230 Hb_001247_170--Hb_000497_230 Hb_007757_100 Hb_007757_100 Hb_001279_330--Hb_007757_100 Hb_001279_330--Hb_000424_230 Hb_004218_070 Hb_004218_070 Hb_001279_330--Hb_004218_070 Hb_001279_330--Hb_005368_010 Hb_008406_140 Hb_008406_140 Hb_001279_330--Hb_008406_140 Hb_000755_080 Hb_000755_080 Hb_000261_520--Hb_000755_080 Hb_000375_030 Hb_000375_030 Hb_000261_520--Hb_000375_030 Hb_091384_010 Hb_091384_010 Hb_000261_520--Hb_091384_010 Hb_000640_220 Hb_000640_220 Hb_000261_520--Hb_000640_220 Hb_005895_040 Hb_005895_040 Hb_000261_520--Hb_005895_040 Hb_004376_030 Hb_004376_030 Hb_000261_520--Hb_004376_030 Hb_000768_030 Hb_000768_030 Hb_000175_490--Hb_000768_030 Hb_023226_060 Hb_023226_060 Hb_000175_490--Hb_023226_060 Hb_000997_020 Hb_000997_020 Hb_000175_490--Hb_000997_020 Hb_004032_050 Hb_004032_050 Hb_000175_490--Hb_004032_050 Hb_182026_010 Hb_182026_010 Hb_000175_490--Hb_182026_010 Hb_002276_190 Hb_002276_190 Hb_000175_490--Hb_002276_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.20198 0.271145 1.37449 3.44646 11.5575 6.41888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.38188 1.57746 1.96049 0.552448 0.463587

CAGE analysis