Hb_005928_100

Information

Type -
Description -
Location Contig5928: 97232-104594
Sequence    

Annotation

kegg
ID rcu:RCOM_0992240
description ring finger protein, putative
nr
ID XP_012092096.1
description PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
swissprot
ID Q94AY3
description E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1
trembl
ID A0A067JF16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21829 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin protein ligase drip2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50315: 97334-104594 , PASA_asmbl_50316: 100814-101101
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005928_100 0.0 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
2 Hb_002043_050 0.0970988641 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
3 Hb_000111_450 0.1020693032 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
4 Hb_010407_180 0.1026880529 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
5 Hb_002284_200 0.1047638231 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
6 Hb_003994_190 0.1071071052 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000120_960 0.1085981135 - - isocitrate dehydrogenase, putative [Ricinus communis]
8 Hb_000563_250 0.1136865755 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
9 Hb_001279_340 0.1190503847 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
10 Hb_000086_280 0.1215745465 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
11 Hb_004375_140 0.1230935369 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
12 Hb_000117_090 0.1234872637 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
13 Hb_008566_050 0.1248996181 - - phosphoglycerate mutase, putative [Ricinus communis]
14 Hb_002205_130 0.1266931764 - - hypothetical protein B456_008G176100 [Gossypium raimondii]
15 Hb_003540_030 0.1282056091 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
16 Hb_001776_160 0.1284835271 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
17 Hb_003086_150 0.1287282681 - - PREDICTED: uncharacterized protein LOC105635789 [Jatropha curcas]
18 Hb_012505_010 0.1296898035 - - mak, putative [Ricinus communis]
19 Hb_000530_070 0.1298831477 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
20 Hb_001545_100 0.1304972491 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]

Gene co-expression network

sample Hb_005928_100 Hb_005928_100 Hb_002043_050 Hb_002043_050 Hb_005928_100--Hb_002043_050 Hb_000111_450 Hb_000111_450 Hb_005928_100--Hb_000111_450 Hb_010407_180 Hb_010407_180 Hb_005928_100--Hb_010407_180 Hb_002284_200 Hb_002284_200 Hb_005928_100--Hb_002284_200 Hb_003994_190 Hb_003994_190 Hb_005928_100--Hb_003994_190 Hb_000120_960 Hb_000120_960 Hb_005928_100--Hb_000120_960 Hb_002043_050--Hb_000120_960 Hb_002043_050--Hb_003994_190 Hb_001279_340 Hb_001279_340 Hb_002043_050--Hb_001279_340 Hb_002043_050--Hb_010407_180 Hb_000155_200 Hb_000155_200 Hb_002043_050--Hb_000155_200 Hb_013405_140 Hb_013405_140 Hb_000111_450--Hb_013405_140 Hb_011485_020 Hb_011485_020 Hb_000111_450--Hb_011485_020 Hb_000111_450--Hb_002284_200 Hb_000479_160 Hb_000479_160 Hb_000111_450--Hb_000479_160 Hb_000111_450--Hb_003994_190 Hb_001776_160 Hb_001776_160 Hb_000111_450--Hb_001776_160 Hb_010407_180--Hb_000120_960 Hb_010407_180--Hb_001279_340 Hb_000125_030 Hb_000125_030 Hb_010407_180--Hb_000125_030 Hb_000563_250 Hb_000563_250 Hb_010407_180--Hb_000563_250 Hb_003582_040 Hb_003582_040 Hb_010407_180--Hb_003582_040 Hb_019263_020 Hb_019263_020 Hb_002284_200--Hb_019263_020 Hb_000748_130 Hb_000748_130 Hb_002284_200--Hb_000748_130 Hb_002284_200--Hb_001279_340 Hb_002284_200--Hb_000563_250 Hb_000366_090 Hb_000366_090 Hb_002284_200--Hb_000366_090 Hb_003994_190--Hb_001279_340 Hb_000130_110 Hb_000130_110 Hb_003994_190--Hb_000130_110 Hb_000340_310 Hb_000340_310 Hb_003994_190--Hb_000340_310 Hb_002660_070 Hb_002660_070 Hb_000120_960--Hb_002660_070 Hb_000086_280 Hb_000086_280 Hb_000120_960--Hb_000086_280 Hb_003540_030 Hb_003540_030 Hb_000120_960--Hb_003540_030 Hb_020805_130 Hb_020805_130 Hb_000120_960--Hb_020805_130 Hb_007044_120 Hb_007044_120 Hb_000120_960--Hb_007044_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.78652 3.377 7.97805 4.74902 3.96695 2.86218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.71492 19.4946 21.6207 5.53973 4.58459

CAGE analysis