Hb_005928_110

Information

Type -
Description -
Location Contig5928: 107611-108201
Sequence    

Annotation

kegg
ID pop:POPTR_0005s24060g
description POPTRDRAFT_651854; hypothetical protein
nr
ID XP_012092095.1
description PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
swissprot
ID Q9C889
description PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1
trembl
ID A0A067JC27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21828 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005928_110 0.0 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
2 Hb_000109_160 0.0633983651 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
3 Hb_009615_150 0.067699329 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
4 Hb_001610_110 0.0846335182 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
5 Hb_086639_070 0.0861100458 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
6 Hb_003994_180 0.0908403642 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]
7 Hb_000621_080 0.0909312078 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007590_050 0.094264459 - - NudC domain-containing protein, putative [Ricinus communis]
9 Hb_004324_340 0.0949959119 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002685_170 0.0965689308 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
11 Hb_008959_030 0.0982408045 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
12 Hb_004109_200 0.1008280613 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
13 Hb_002150_080 0.101319732 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
14 Hb_001143_130 0.1033736065 - - peroxidase 2 [Hevea brasiliensis]
15 Hb_000127_130 0.1036951517 - - PREDICTED: uncharacterized protein LOC105635483 [Jatropha curcas]
16 Hb_002375_020 0.1038211049 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
17 Hb_002495_070 0.1043432099 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
18 Hb_001288_080 0.1044089703 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
19 Hb_004920_040 0.104759082 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
20 Hb_005357_030 0.1050431496 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005928_110 Hb_005928_110 Hb_000109_160 Hb_000109_160 Hb_005928_110--Hb_000109_160 Hb_009615_150 Hb_009615_150 Hb_005928_110--Hb_009615_150 Hb_001610_110 Hb_001610_110 Hb_005928_110--Hb_001610_110 Hb_086639_070 Hb_086639_070 Hb_005928_110--Hb_086639_070 Hb_003994_180 Hb_003994_180 Hb_005928_110--Hb_003994_180 Hb_000621_080 Hb_000621_080 Hb_005928_110--Hb_000621_080 Hb_007590_050 Hb_007590_050 Hb_000109_160--Hb_007590_050 Hb_005357_030 Hb_005357_030 Hb_000109_160--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_000109_160--Hb_002685_170 Hb_020956_020 Hb_020956_020 Hb_000109_160--Hb_020956_020 Hb_000510_130 Hb_000510_130 Hb_000109_160--Hb_000510_130 Hb_000445_180 Hb_000445_180 Hb_009615_150--Hb_000445_180 Hb_026198_050 Hb_026198_050 Hb_009615_150--Hb_026198_050 Hb_021254_030 Hb_021254_030 Hb_009615_150--Hb_021254_030 Hb_009615_150--Hb_000109_160 Hb_009615_150--Hb_000621_080 Hb_001623_140 Hb_001623_140 Hb_001610_110--Hb_001623_140 Hb_052764_050 Hb_052764_050 Hb_001610_110--Hb_052764_050 Hb_004324_340 Hb_004324_340 Hb_001610_110--Hb_004324_340 Hb_001288_080 Hb_001288_080 Hb_001610_110--Hb_001288_080 Hb_001610_110--Hb_000621_080 Hb_001610_110--Hb_086639_070 Hb_000661_250 Hb_000661_250 Hb_086639_070--Hb_000661_250 Hb_000808_040 Hb_000808_040 Hb_086639_070--Hb_000808_040 Hb_000000_160 Hb_000000_160 Hb_086639_070--Hb_000000_160 Hb_070739_010 Hb_070739_010 Hb_086639_070--Hb_070739_010 Hb_001259_090 Hb_001259_090 Hb_086639_070--Hb_001259_090 Hb_007919_060 Hb_007919_060 Hb_086639_070--Hb_007919_060 Hb_023226_040 Hb_023226_040 Hb_003994_180--Hb_023226_040 Hb_003994_180--Hb_000808_040 Hb_001195_690 Hb_001195_690 Hb_003994_180--Hb_001195_690 Hb_004324_310 Hb_004324_310 Hb_003994_180--Hb_004324_310 Hb_001138_050 Hb_001138_050 Hb_003994_180--Hb_001138_050 Hb_159558_030 Hb_159558_030 Hb_003994_180--Hb_159558_030 Hb_000923_020 Hb_000923_020 Hb_000621_080--Hb_000923_020 Hb_002495_070 Hb_002495_070 Hb_000621_080--Hb_002495_070 Hb_004722_060 Hb_004722_060 Hb_000621_080--Hb_004722_060 Hb_002150_080 Hb_002150_080 Hb_000621_080--Hb_002150_080 Hb_000621_080--Hb_086639_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.415 25.9243 6.89785 13.2848 20.5058 24.2461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.6743 31.3304 16.9965 10.1616 3.29052

CAGE analysis