Hb_005935_010

Information

Type -
Description -
Location Contig5935: 22959-24100
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005935_010 0.0 - - -
2 Hb_002626_020 0.1292853794 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
3 Hb_068946_010 0.1717487095 - - hypothetical protein CICLE_v100122621mg, partial [Citrus clementina]
4 Hb_002687_050 0.1853832564 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]
5 Hb_002400_090 0.1915733447 - - -
6 Hb_123202_010 0.1949528067 - - thioredoxin h [Hevea brasiliensis]
7 Hb_008725_200 0.1976836355 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
8 Hb_121236_010 0.1983519695 - - geranyl-diphosphate synthase [Hevea brasiliensis]
9 Hb_134789_010 0.1999251326 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
10 Hb_001012_020 0.2032946324 transcription factor TF Family: M-type unnamed protein product [Coffea canephora]
11 Hb_135403_010 0.2107404537 - - HEV1.1 [Hevea brasiliensis]
12 Hb_027445_060 0.2111249421 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
13 Hb_000603_220 0.2114867764 - - PREDICTED: MADS-box transcription factor 23 [Jatropha curcas]
14 Hb_000453_260 0.2128904446 - - PREDICTED: armadillo repeat-containing protein 7 isoform X1 [Vitis vinifera]
15 Hb_006198_050 0.2169919482 - - protein with unknown function [Ricinus communis]
16 Hb_003813_100 0.2177776768 - - PREDICTED: proteasome subunit beta type-3-A [Cucumis sativus]
17 Hb_004072_010 0.220645072 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
18 Hb_001095_060 0.2208571319 - - Uncharacterized protein TCM_012505 [Theobroma cacao]
19 Hb_000329_770 0.2210048684 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000155_070 0.2239328021 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]

Gene co-expression network

sample Hb_005935_010 Hb_005935_010 Hb_002626_020 Hb_002626_020 Hb_005935_010--Hb_002626_020 Hb_068946_010 Hb_068946_010 Hb_005935_010--Hb_068946_010 Hb_002687_050 Hb_002687_050 Hb_005935_010--Hb_002687_050 Hb_002400_090 Hb_002400_090 Hb_005935_010--Hb_002400_090 Hb_123202_010 Hb_123202_010 Hb_005935_010--Hb_123202_010 Hb_008725_200 Hb_008725_200 Hb_005935_010--Hb_008725_200 Hb_000453_260 Hb_000453_260 Hb_002626_020--Hb_000453_260 Hb_004072_010 Hb_004072_010 Hb_002626_020--Hb_004072_010 Hb_002626_020--Hb_068946_010 Hb_000491_090 Hb_000491_090 Hb_002626_020--Hb_000491_090 Hb_134789_010 Hb_134789_010 Hb_002626_020--Hb_134789_010 Hb_027445_060 Hb_027445_060 Hb_068946_010--Hb_027445_060 Hb_001095_060 Hb_001095_060 Hb_068946_010--Hb_001095_060 Hb_001488_110 Hb_001488_110 Hb_068946_010--Hb_001488_110 Hb_068946_010--Hb_004072_010 Hb_004968_060 Hb_004968_060 Hb_068946_010--Hb_004968_060 Hb_002687_050--Hb_008725_200 Hb_103873_010 Hb_103873_010 Hb_002687_050--Hb_103873_010 Hb_002687_050--Hb_134789_010 Hb_006602_010 Hb_006602_010 Hb_002687_050--Hb_006602_010 Hb_004735_010 Hb_004735_010 Hb_002687_050--Hb_004735_010 Hb_006198_050 Hb_006198_050 Hb_002687_050--Hb_006198_050 Hb_000329_600 Hb_000329_600 Hb_002400_090--Hb_000329_600 Hb_021888_130 Hb_021888_130 Hb_002400_090--Hb_021888_130 Hb_000603_220 Hb_000603_220 Hb_002400_090--Hb_000603_220 Hb_002374_460 Hb_002374_460 Hb_002400_090--Hb_002374_460 Hb_000330_170 Hb_000330_170 Hb_002400_090--Hb_000330_170 Hb_123202_010--Hb_000453_260 Hb_010298_010 Hb_010298_010 Hb_123202_010--Hb_010298_010 Hb_000329_770 Hb_000329_770 Hb_123202_010--Hb_000329_770 Hb_123202_010--Hb_006602_010 Hb_123202_010--Hb_004735_010 Hb_005965_010 Hb_005965_010 Hb_123202_010--Hb_005965_010 Hb_008725_200--Hb_134789_010 Hb_033448_010 Hb_033448_010 Hb_008725_200--Hb_033448_010 Hb_000032_540 Hb_000032_540 Hb_008725_200--Hb_000032_540 Hb_049415_020 Hb_049415_020 Hb_008725_200--Hb_049415_020 Hb_000144_090 Hb_000144_090 Hb_008725_200--Hb_000144_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.772639 0 0 0 0.782431 4.35958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.63407 1.30369 1.56636 0.61342 0

CAGE analysis