Hb_005941_010

Information

Type -
Description -
Location Contig5941: 20313-28901
Sequence    

Annotation

kegg
ID pop:POPTR_0004s22080g
description hypothetical protein
nr
ID XP_012064818.1
description PREDICTED: protein SAND [Jatropha curcas]
swissprot
ID Q86VX9
description Vacuolar fusion protein MON1 homolog A OS=Homo sapiens GN=MON1A PE=1 SV=2
trembl
ID A0A067L9X7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05515 PE=4 SV=1
Gene Ontology
ID GO:0005623
description protein sand

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50348: 27042-28885 , PASA_asmbl_50349: 20366-28447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005941_010 0.0 - - PREDICTED: protein SAND [Jatropha curcas]
2 Hb_000152_140 0.0786803922 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
3 Hb_005245_090 0.0892351437 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
4 Hb_004242_100 0.0897156796 - - RNA binding protein, putative [Ricinus communis]
5 Hb_003050_040 0.0901990938 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
6 Hb_000696_110 0.0924799273 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
7 Hb_000984_190 0.09286436 - - -
8 Hb_003086_020 0.0954990665 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
9 Hb_098709_010 0.0957640583 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
10 Hb_033491_010 0.1025264645 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
11 Hb_002025_320 0.1037618391 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
12 Hb_000282_060 0.1042601762 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
13 Hb_003453_010 0.1063843552 - - conserved hypothetical protein [Ricinus communis]
14 Hb_023226_090 0.1083707124 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
15 Hb_000387_080 0.1097237638 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
16 Hb_017895_050 0.1098517789 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
17 Hb_006569_020 0.1108760151 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
18 Hb_001437_040 0.110927751 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
19 Hb_000705_260 0.1113631873 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002518_250 0.1118826753 - - conserved hypothetical protein 10 [Hevea brasiliensis]

Gene co-expression network

sample Hb_005941_010 Hb_005941_010 Hb_000152_140 Hb_000152_140 Hb_005941_010--Hb_000152_140 Hb_005245_090 Hb_005245_090 Hb_005941_010--Hb_005245_090 Hb_004242_100 Hb_004242_100 Hb_005941_010--Hb_004242_100 Hb_003050_040 Hb_003050_040 Hb_005941_010--Hb_003050_040 Hb_000696_110 Hb_000696_110 Hb_005941_010--Hb_000696_110 Hb_000984_190 Hb_000984_190 Hb_005941_010--Hb_000984_190 Hb_003086_020 Hb_003086_020 Hb_000152_140--Hb_003086_020 Hb_002686_270 Hb_002686_270 Hb_000152_140--Hb_002686_270 Hb_002025_320 Hb_002025_320 Hb_000152_140--Hb_002025_320 Hb_000700_090 Hb_000700_090 Hb_000152_140--Hb_000700_090 Hb_000152_140--Hb_000696_110 Hb_000771_140 Hb_000771_140 Hb_005245_090--Hb_000771_140 Hb_005245_090--Hb_004242_100 Hb_098709_010 Hb_098709_010 Hb_005245_090--Hb_098709_010 Hb_026048_090 Hb_026048_090 Hb_005245_090--Hb_026048_090 Hb_009510_030 Hb_009510_030 Hb_005245_090--Hb_009510_030 Hb_004072_010 Hb_004072_010 Hb_004242_100--Hb_004072_010 Hb_004242_100--Hb_003050_040 Hb_002263_010 Hb_002263_010 Hb_004242_100--Hb_002263_010 Hb_000705_260 Hb_000705_260 Hb_004242_100--Hb_000705_260 Hb_033491_010 Hb_033491_010 Hb_003050_040--Hb_033491_010 Hb_003352_050 Hb_003352_050 Hb_003050_040--Hb_003352_050 Hb_003050_040--Hb_005245_090 Hb_002942_030 Hb_002942_030 Hb_003050_040--Hb_002942_030 Hb_000057_060 Hb_000057_060 Hb_000696_110--Hb_000057_060 Hb_000599_120 Hb_000599_120 Hb_000696_110--Hb_000599_120 Hb_000538_210 Hb_000538_210 Hb_000696_110--Hb_000538_210 Hb_010174_130 Hb_010174_130 Hb_000696_110--Hb_010174_130 Hb_002357_040 Hb_002357_040 Hb_000696_110--Hb_002357_040 Hb_001235_070 Hb_001235_070 Hb_000984_190--Hb_001235_070 Hb_003453_010 Hb_003453_010 Hb_000984_190--Hb_003453_010 Hb_001437_040 Hb_001437_040 Hb_000984_190--Hb_001437_040 Hb_017895_050 Hb_017895_050 Hb_000984_190--Hb_017895_050 Hb_000984_190--Hb_003086_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.6392 9.34391 7.32802 7.78512 59.7119 86.3324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
108.659 43.9574 61.1583 20.1462 8.81201

CAGE analysis