Hb_005941_030

Information

Type transcription factor
Description TF Family: HB
Location Contig5941: 60601-69401
Sequence    

Annotation

kegg
ID rcu:RCOM_0034760
description DNA binding protein, putative
nr
ID XP_002529946.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9SE43
description Homeobox-leucine zipper protein REVOLUTA OS=Arabidopsis thaliana GN=REV PE=1 SV=2
trembl
ID B9SVC7
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0034760 PE=4 SV=1
Gene Ontology
ID GO:0003677
description homeobox-leucine zipper protein revoluta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50355: 60663-69424 , PASA_asmbl_50356: 69256-69764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005941_030 0.0 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
2 Hb_000071_160 0.1082182926 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
3 Hb_014497_040 0.1138434631 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
4 Hb_011828_010 0.1228445996 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
5 Hb_003029_060 0.1247171258 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
6 Hb_014361_090 0.1250438062 - - acyl-CoA binding protein 3A [Vernicia fordii]
7 Hb_009838_020 0.1308459557 - - PREDICTED: cysteine-rich repeat secretory protein 3 [Jatropha curcas]
8 Hb_004899_340 0.136009045 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
9 Hb_003102_030 0.1380239883 - - PREDICTED: uncharacterized protein LOC105644418 [Jatropha curcas]
10 Hb_003929_190 0.1383090515 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
11 Hb_004631_170 0.1411881602 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012762_060 0.1480636815 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
13 Hb_030565_050 0.1482330159 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
14 Hb_010812_110 0.1490593982 - - putative plant disease resistance family protein [Populus trichocarpa]
15 Hb_007044_160 0.1518078644 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Populus euphratica]
16 Hb_000562_100 0.1525858847 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
17 Hb_001711_080 0.1527869178 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
18 Hb_000012_400 0.1545373578 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
19 Hb_000011_070 0.155011803 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
20 Hb_150440_010 0.1550898156 - - -

Gene co-expression network

sample Hb_005941_030 Hb_005941_030 Hb_000071_160 Hb_000071_160 Hb_005941_030--Hb_000071_160 Hb_014497_040 Hb_014497_040 Hb_005941_030--Hb_014497_040 Hb_011828_010 Hb_011828_010 Hb_005941_030--Hb_011828_010 Hb_003029_060 Hb_003029_060 Hb_005941_030--Hb_003029_060 Hb_014361_090 Hb_014361_090 Hb_005941_030--Hb_014361_090 Hb_009838_020 Hb_009838_020 Hb_005941_030--Hb_009838_020 Hb_000071_160--Hb_014361_090 Hb_000071_160--Hb_011828_010 Hb_000271_220 Hb_000271_220 Hb_000071_160--Hb_000271_220 Hb_004899_340 Hb_004899_340 Hb_000071_160--Hb_004899_340 Hb_003929_190 Hb_003929_190 Hb_000071_160--Hb_003929_190 Hb_000012_400 Hb_000012_400 Hb_014497_040--Hb_000012_400 Hb_014497_040--Hb_003029_060 Hb_010812_110 Hb_010812_110 Hb_014497_040--Hb_010812_110 Hb_000562_100 Hb_000562_100 Hb_014497_040--Hb_000562_100 Hb_004631_170 Hb_004631_170 Hb_014497_040--Hb_004631_170 Hb_000473_120 Hb_000473_120 Hb_011828_010--Hb_000473_120 Hb_000138_060 Hb_000138_060 Hb_011828_010--Hb_000138_060 Hb_002289_150 Hb_002289_150 Hb_011828_010--Hb_002289_150 Hb_001969_140 Hb_001969_140 Hb_011828_010--Hb_001969_140 Hb_116702_010 Hb_116702_010 Hb_011828_010--Hb_116702_010 Hb_011828_010--Hb_000271_220 Hb_003029_060--Hb_003929_190 Hb_003029_060--Hb_009838_020 Hb_003029_060--Hb_000071_160 Hb_000977_290 Hb_000977_290 Hb_003029_060--Hb_000977_290 Hb_030565_050 Hb_030565_050 Hb_014361_090--Hb_030565_050 Hb_014361_090--Hb_011828_010 Hb_002559_030 Hb_002559_030 Hb_014361_090--Hb_002559_030 Hb_014361_090--Hb_004899_340 Hb_009838_020--Hb_004899_340 Hb_001221_190 Hb_001221_190 Hb_009838_020--Hb_001221_190 Hb_009838_020--Hb_000071_160 Hb_009838_020--Hb_000977_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.12929 6.49966 7.64108 22.8479 3.04973 5.64281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.403605 0.359418 0.305084 3.21766 10.4453

CAGE analysis