Hb_005941_040

Information

Type -
Description -
Location Contig5941: 71849-75713
Sequence    

Annotation

kegg
ID rcu:RCOM_0034740
description hypothetical protein
nr
ID XP_012064814.1
description PREDICTED: CASP-like protein 5A2 [Jatropha curcas]
swissprot
ID Q9SKN3
description CASP-like protein 5A2 OS=Arabidopsis thaliana GN=At2g28370 PE=2 SV=1
trembl
ID A0A067LIH6
description CASP-like protein OS=Jatropha curcas GN=JCGZ_05511 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 5a2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50359: 71891-75660 , PASA_asmbl_50360: 75208-75524 , PASA_asmbl_50362: 73392-73803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005941_040 0.0 - - PREDICTED: CASP-like protein 5A2 [Jatropha curcas]
2 Hb_002284_010 0.0577878531 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002163_020 0.0781335933 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
4 Hb_000635_180 0.0782492031 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
5 Hb_000445_180 0.0795426923 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
6 Hb_028995_040 0.0821037467 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
7 Hb_000705_210 0.0840582855 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
8 Hb_002301_140 0.0853802729 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
9 Hb_003057_100 0.0859942628 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
10 Hb_005539_350 0.0870412461 - - conserved hypothetical protein [Ricinus communis]
11 Hb_029866_090 0.0872561586 - - PREDICTED: uncharacterized protein LOC105648377 [Jatropha curcas]
12 Hb_002030_040 0.088095206 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
13 Hb_000510_130 0.0916645679 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
14 Hb_001195_690 0.0928433561 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
15 Hb_004324_310 0.0930837883 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000221_210 0.0939503115 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
17 Hb_061802_020 0.0944126735 - - zinc finger family protein [Populus trichocarpa]
18 Hb_011224_110 0.0953856644 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
19 Hb_065525_020 0.0965130671 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
20 Hb_000679_010 0.0983319698 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]

Gene co-expression network

sample Hb_005941_040 Hb_005941_040 Hb_002284_010 Hb_002284_010 Hb_005941_040--Hb_002284_010 Hb_002163_020 Hb_002163_020 Hb_005941_040--Hb_002163_020 Hb_000635_180 Hb_000635_180 Hb_005941_040--Hb_000635_180 Hb_000445_180 Hb_000445_180 Hb_005941_040--Hb_000445_180 Hb_028995_040 Hb_028995_040 Hb_005941_040--Hb_028995_040 Hb_000705_210 Hb_000705_210 Hb_005941_040--Hb_000705_210 Hb_029866_060 Hb_029866_060 Hb_002284_010--Hb_029866_060 Hb_002284_010--Hb_002163_020 Hb_002284_010--Hb_000635_180 Hb_002301_140 Hb_002301_140 Hb_002284_010--Hb_002301_140 Hb_002284_010--Hb_028995_040 Hb_011224_110 Hb_011224_110 Hb_002163_020--Hb_011224_110 Hb_002163_020--Hb_029866_060 Hb_000915_090 Hb_000915_090 Hb_002163_020--Hb_000915_090 Hb_000240_090 Hb_000240_090 Hb_002163_020--Hb_000240_090 Hb_000635_180--Hb_002301_140 Hb_000635_180--Hb_028995_040 Hb_030736_080 Hb_030736_080 Hb_000635_180--Hb_030736_080 Hb_001235_190 Hb_001235_190 Hb_000635_180--Hb_001235_190 Hb_000031_060 Hb_000031_060 Hb_000445_180--Hb_000031_060 Hb_009615_150 Hb_009615_150 Hb_000445_180--Hb_009615_150 Hb_000224_170 Hb_000224_170 Hb_000445_180--Hb_000224_170 Hb_126643_020 Hb_126643_020 Hb_000445_180--Hb_126643_020 Hb_001623_420 Hb_001623_420 Hb_000445_180--Hb_001623_420 Hb_001552_020 Hb_001552_020 Hb_028995_040--Hb_001552_020 Hb_000866_270 Hb_000866_270 Hb_028995_040--Hb_000866_270 Hb_004491_010 Hb_004491_010 Hb_028995_040--Hb_004491_010 Hb_004657_050 Hb_004657_050 Hb_028995_040--Hb_004657_050 Hb_003078_040 Hb_003078_040 Hb_028995_040--Hb_003078_040 Hb_028995_040--Hb_002301_140 Hb_000987_070 Hb_000987_070 Hb_000705_210--Hb_000987_070 Hb_001105_070 Hb_001105_070 Hb_000705_210--Hb_001105_070 Hb_029866_090 Hb_029866_090 Hb_000705_210--Hb_029866_090 Hb_012053_070 Hb_012053_070 Hb_000705_210--Hb_012053_070 Hb_000510_130 Hb_000510_130 Hb_000705_210--Hb_000510_130 Hb_005431_010 Hb_005431_010 Hb_000705_210--Hb_005431_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.6784 26.4842 17.4619 19.4148 30.4224 30.9866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.1061 45.8313 44.7831 13.0194 9.05876

CAGE analysis