Hb_005946_020

Information

Type -
Description -
Location Contig5946: 5596-10688
Sequence    

Annotation

kegg
ID pvu:PHAVU_001G165800g
description hypothetical protein
nr
ID EMS60397.1
description Pleiotropic drug resistance protein 4 [Triticum urartu]
swissprot
ID Q8ST66
description ABC transporter G family member 18 OS=Dictyostelium discoideum GN=abcG18 PE=3 SV=1
trembl
ID M7ZJV2
description Pleiotropic drug resistance protein 4 OS=Triticum urartu GN=TRIUR3_17711 PE=4 SV=1
Gene Ontology
ID GO:0016887
description pleiotropic drug resistance protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50363: 5737-6157 , PASA_asmbl_50364: 7372-8155 , PASA_asmbl_50365: 9713-10386
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005946_020 0.0 - - Pleiotropic drug resistance protein 4 [Triticum urartu]
2 Hb_006570_040 0.1384956913 - - hypothetical protein CICLE_v10002683mg [Citrus clementina]
3 Hb_000956_050 0.1659633646 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
4 Hb_031266_030 0.1735152397 - - Kinase superfamily protein isoform 1 [Theobroma cacao]
5 Hb_000028_250 0.173809667 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
6 Hb_000028_240 0.1738110666 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000190_220 0.1750518751 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
8 Hb_000139_280 0.176991807 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
9 Hb_003784_040 0.1818994779 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
10 Hb_014497_070 0.1833187203 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
11 Hb_004046_060 0.1893444058 - - PREDICTED: protein CDI [Jatropha curcas]
12 Hb_003599_060 0.1914164296 - - calmodulin binding protein, putative [Ricinus communis]
13 Hb_000567_290 0.1923768029 - - hypothetical protein RCOM_0303940 [Ricinus communis]
14 Hb_005504_040 0.19312214 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002311_090 0.1939898203 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
16 Hb_033594_040 0.1959241718 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
17 Hb_000500_340 0.1976249378 - - PREDICTED: exonuclease 1 [Jatropha curcas]
18 Hb_000051_080 0.1977413151 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]
19 Hb_002249_010 0.1981923905 - - serine carboxypeptidase, putative [Ricinus communis]
20 Hb_001250_130 0.1992026269 - - hypothetical protein POPTR_0008s19280g [Populus trichocarpa]

Gene co-expression network

sample Hb_005946_020 Hb_005946_020 Hb_006570_040 Hb_006570_040 Hb_005946_020--Hb_006570_040 Hb_000956_050 Hb_000956_050 Hb_005946_020--Hb_000956_050 Hb_031266_030 Hb_031266_030 Hb_005946_020--Hb_031266_030 Hb_000028_250 Hb_000028_250 Hb_005946_020--Hb_000028_250 Hb_000028_240 Hb_000028_240 Hb_005946_020--Hb_000028_240 Hb_000190_220 Hb_000190_220 Hb_005946_020--Hb_000190_220 Hb_006570_040--Hb_000028_240 Hb_000139_280 Hb_000139_280 Hb_006570_040--Hb_000139_280 Hb_006570_040--Hb_000190_220 Hb_000260_040 Hb_000260_040 Hb_006570_040--Hb_000260_040 Hb_006570_040--Hb_000956_050 Hb_000956_050--Hb_000190_220 Hb_003228_050 Hb_003228_050 Hb_000956_050--Hb_003228_050 Hb_003813_090 Hb_003813_090 Hb_000956_050--Hb_003813_090 Hb_024714_090 Hb_024714_090 Hb_000956_050--Hb_024714_090 Hb_000907_140 Hb_000907_140 Hb_000956_050--Hb_000907_140 Hb_002311_090 Hb_002311_090 Hb_000956_050--Hb_002311_090 Hb_012753_150 Hb_012753_150 Hb_031266_030--Hb_012753_150 Hb_003599_060 Hb_003599_060 Hb_031266_030--Hb_003599_060 Hb_006060_010 Hb_006060_010 Hb_031266_030--Hb_006060_010 Hb_014497_070 Hb_014497_070 Hb_031266_030--Hb_014497_070 Hb_003878_060 Hb_003878_060 Hb_031266_030--Hb_003878_060 Hb_000388_040 Hb_000388_040 Hb_031266_030--Hb_000388_040 Hb_000115_190 Hb_000115_190 Hb_000028_250--Hb_000115_190 Hb_005162_120 Hb_005162_120 Hb_000028_250--Hb_005162_120 Hb_001377_340 Hb_001377_340 Hb_000028_250--Hb_001377_340 Hb_001755_040 Hb_001755_040 Hb_000028_250--Hb_001755_040 Hb_000028_250--Hb_000388_040 Hb_003767_030 Hb_003767_030 Hb_000028_250--Hb_003767_030 Hb_002979_030 Hb_002979_030 Hb_000028_240--Hb_002979_030 Hb_000028_240--Hb_000028_250 Hb_000028_240--Hb_005162_120 Hb_000441_210 Hb_000441_210 Hb_000028_240--Hb_000441_210 Hb_002205_180 Hb_002205_180 Hb_000028_240--Hb_002205_180 Hb_000190_220--Hb_000139_280 Hb_000190_220--Hb_002311_090 Hb_010436_080 Hb_010436_080 Hb_000190_220--Hb_010436_080 Hb_007943_180 Hb_007943_180 Hb_000190_220--Hb_007943_180 Hb_006970_130 Hb_006970_130 Hb_000190_220--Hb_006970_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0911424 1.21127 0.569146 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.129816 0.0681037 0.0651443 0.0315127 0.1211

CAGE analysis