Hb_005946_040

Information

Type -
Description -
Location Contig5946: 24760-28893
Sequence    

Annotation

kegg
ID rcu:RCOM_1053570
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012076657.1
description PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
swissprot
ID Q9SLA1
description Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=2 SV=1
trembl
ID A0A067KPC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07215 PE=3 SV=1
Gene Ontology
ID GO:0005634
description probable protein phosphatase 2c 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50368: 25382-28651
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005946_040 0.0 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
2 Hb_000537_100 0.0642237135 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
3 Hb_005162_110 0.0654645205 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
4 Hb_002876_300 0.0677054666 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
5 Hb_029622_120 0.0711505329 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
6 Hb_002631_240 0.0738617375 - - JHL17M24.3 [Jatropha curcas]
7 Hb_007558_090 0.0782412813 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_005494_010 0.0789724742 - - catalytic, putative [Ricinus communis]
9 Hb_001703_040 0.0797866394 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
10 Hb_000003_170 0.0798342271 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
11 Hb_001935_100 0.0804254427 - - structural molecule, putative [Ricinus communis]
12 Hb_012438_030 0.0804324401 - - PREDICTED: protein sym-1 [Jatropha curcas]
13 Hb_001900_140 0.0808004159 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
14 Hb_000003_780 0.0814950261 - - hexokinase [Manihot esculenta]
15 Hb_073973_090 0.0827737377 - - Aminotransferase ybdL, putative [Ricinus communis]
16 Hb_000163_260 0.0829637495 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
17 Hb_006907_060 0.084289607 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
18 Hb_000035_090 0.0860708885 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
19 Hb_014497_100 0.087193224 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
20 Hb_049575_010 0.0881443651 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]

Gene co-expression network

sample Hb_005946_040 Hb_005946_040 Hb_000537_100 Hb_000537_100 Hb_005946_040--Hb_000537_100 Hb_005162_110 Hb_005162_110 Hb_005946_040--Hb_005162_110 Hb_002876_300 Hb_002876_300 Hb_005946_040--Hb_002876_300 Hb_029622_120 Hb_029622_120 Hb_005946_040--Hb_029622_120 Hb_002631_240 Hb_002631_240 Hb_005946_040--Hb_002631_240 Hb_007558_090 Hb_007558_090 Hb_005946_040--Hb_007558_090 Hb_000537_100--Hb_029622_120 Hb_073973_090 Hb_073973_090 Hb_000537_100--Hb_073973_090 Hb_000537_100--Hb_002631_240 Hb_002316_140 Hb_002316_140 Hb_000537_100--Hb_002316_140 Hb_001178_010 Hb_001178_010 Hb_000537_100--Hb_001178_010 Hb_021650_010 Hb_021650_010 Hb_005162_110--Hb_021650_010 Hb_000003_170 Hb_000003_170 Hb_005162_110--Hb_000003_170 Hb_005731_110 Hb_005731_110 Hb_005162_110--Hb_005731_110 Hb_000051_060 Hb_000051_060 Hb_005162_110--Hb_000051_060 Hb_003752_070 Hb_003752_070 Hb_005162_110--Hb_003752_070 Hb_030414_040 Hb_030414_040 Hb_002876_300--Hb_030414_040 Hb_000826_030 Hb_000826_030 Hb_002876_300--Hb_000826_030 Hb_000035_090 Hb_000035_090 Hb_002876_300--Hb_000035_090 Hb_113853_010 Hb_113853_010 Hb_002876_300--Hb_113853_010 Hb_012438_030 Hb_012438_030 Hb_002876_300--Hb_012438_030 Hb_029622_120--Hb_007558_090 Hb_000723_030 Hb_000723_030 Hb_029622_120--Hb_000723_030 Hb_001900_140 Hb_001900_140 Hb_029622_120--Hb_001900_140 Hb_002435_100 Hb_002435_100 Hb_029622_120--Hb_002435_100 Hb_006907_060 Hb_006907_060 Hb_002631_240--Hb_006907_060 Hb_011671_260 Hb_011671_260 Hb_002631_240--Hb_011671_260 Hb_002631_240--Hb_073973_090 Hb_001703_040 Hb_001703_040 Hb_002631_240--Hb_001703_040 Hb_007558_090--Hb_001900_140 Hb_007558_090--Hb_000537_100 Hb_049575_010 Hb_049575_010 Hb_007558_090--Hb_049575_010 Hb_000926_080 Hb_000926_080 Hb_007558_090--Hb_000926_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.20088 5.40783 16.5043 6.57861 4.44511 4.73442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.28724 8.24691 4.47962 5.10516 11.8802

CAGE analysis