Hb_005946_150

Information

Type -
Description -
Location Contig5946: 61956-73251
Sequence    

Annotation

kegg
ID rcu:RCOM_1053350
description DNA mismatch repair protein MSH6-2, putative
nr
ID XP_012076663.1
description PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
swissprot
ID Q9SMV7
description DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana GN=MSH7 PE=1 SV=1
trembl
ID A0A067KMZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07221 PE=3 SV=1
Gene Ontology
ID GO:0005524
description dna mismatch repair protein msh7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50370: 62372-65043 , PASA_asmbl_50371: 65172-66367 , PASA_asmbl_50372: 67189-67788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005946_150 0.0 - - PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
2 Hb_001269_130 0.0759066094 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
3 Hb_008304_020 0.0878279725 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
4 Hb_006824_010 0.0901761112 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
5 Hb_002006_150 0.0909441429 - - copine, putative [Ricinus communis]
6 Hb_000330_090 0.0926566575 - - ornithine carbamoyltransferase, putative [Ricinus communis]
7 Hb_001277_030 0.0955731062 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Nelumbo nucifera]
8 Hb_000174_260 0.0974073131 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
9 Hb_000076_210 0.0981928927 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
10 Hb_000398_060 0.0985546851 - - PREDICTED: survival of motor neuron-related-splicing factor 30 [Jatropha curcas]
11 Hb_012733_040 0.100907497 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
12 Hb_001832_200 0.1010126789 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
13 Hb_003098_070 0.1018481047 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
14 Hb_011674_040 0.1040305317 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
15 Hb_001141_240 0.1048362504 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
16 Hb_000830_020 0.1048564247 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
17 Hb_002126_030 0.1052728995 - - ferrochelatase, putative [Ricinus communis]
18 Hb_000907_180 0.1061310745 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
19 Hb_000364_050 0.1061917653 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
20 Hb_005214_170 0.107329329 - - PREDICTED: uncharacterized protein LOC105636021 [Jatropha curcas]

Gene co-expression network

sample Hb_005946_150 Hb_005946_150 Hb_001269_130 Hb_001269_130 Hb_005946_150--Hb_001269_130 Hb_008304_020 Hb_008304_020 Hb_005946_150--Hb_008304_020 Hb_006824_010 Hb_006824_010 Hb_005946_150--Hb_006824_010 Hb_002006_150 Hb_002006_150 Hb_005946_150--Hb_002006_150 Hb_000330_090 Hb_000330_090 Hb_005946_150--Hb_000330_090 Hb_001277_030 Hb_001277_030 Hb_005946_150--Hb_001277_030 Hb_000663_060 Hb_000663_060 Hb_001269_130--Hb_000663_060 Hb_000080_130 Hb_000080_130 Hb_001269_130--Hb_000080_130 Hb_000364_050 Hb_000364_050 Hb_001269_130--Hb_000364_050 Hb_003098_070 Hb_003098_070 Hb_001269_130--Hb_003098_070 Hb_001269_130--Hb_006824_010 Hb_001635_110 Hb_001635_110 Hb_008304_020--Hb_001635_110 Hb_006189_020 Hb_006189_020 Hb_008304_020--Hb_006189_020 Hb_008304_020--Hb_003098_070 Hb_007483_070 Hb_007483_070 Hb_008304_020--Hb_007483_070 Hb_001504_010 Hb_001504_010 Hb_008304_020--Hb_001504_010 Hb_159809_070 Hb_159809_070 Hb_008304_020--Hb_159809_070 Hb_006824_010--Hb_002006_150 Hb_007904_300 Hb_007904_300 Hb_006824_010--Hb_007904_300 Hb_000139_080 Hb_000139_080 Hb_006824_010--Hb_000139_080 Hb_006824_010--Hb_006189_020 Hb_006824_010--Hb_003098_070 Hb_002006_150--Hb_000139_080 Hb_000078_140 Hb_000078_140 Hb_002006_150--Hb_000078_140 Hb_015099_030 Hb_015099_030 Hb_002006_150--Hb_015099_030 Hb_002675_250 Hb_002675_250 Hb_002006_150--Hb_002675_250 Hb_000101_390 Hb_000101_390 Hb_002006_150--Hb_000101_390 Hb_049575_010 Hb_049575_010 Hb_000330_090--Hb_049575_010 Hb_000174_260 Hb_000174_260 Hb_000330_090--Hb_000174_260 Hb_000330_090--Hb_001269_130 Hb_002693_030 Hb_002693_030 Hb_000330_090--Hb_002693_030 Hb_007904_230 Hb_007904_230 Hb_000330_090--Hb_007904_230 Hb_007199_020 Hb_007199_020 Hb_000330_090--Hb_007199_020 Hb_002900_110 Hb_002900_110 Hb_001277_030--Hb_002900_110 Hb_028960_030 Hb_028960_030 Hb_001277_030--Hb_028960_030 Hb_001571_060 Hb_001571_060 Hb_001277_030--Hb_001571_060 Hb_012733_040 Hb_012733_040 Hb_001277_030--Hb_012733_040 Hb_001277_030--Hb_000364_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.399641 0.899492 2.09815 1.45045 0.395321 0.744347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01822 0.95342 0.680277 1.6725 1.49608

CAGE analysis