Hb_005946_160

Information

Type transcription factor
Description TF Family: MBF1
Location Contig5946: 76798-77232
Sequence    

Annotation

kegg
ID rcu:RCOM_1053340
description Multiprotein-bridging factor, putative
nr
ID AGQ57014.1
description ethylene-responsive transcriptional coactivator [Hevea brasiliensis]
swissprot
ID Q9LV58
description Multiprotein-bridging factor 1c OS=Arabidopsis thaliana GN=MBF1C PE=1 SV=1
trembl
ID S5GA24
description Ethylene-responsive transcriptional coactivator OS=Hevea brasiliensis GN=ERTC1 PE=2 SV=1
Gene Ontology
ID GO:0003700
description multiprotein-bridging factor 1c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 016_D07.ab1: 76784-77389 , 026_B12.ab1: 76784-77262

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005946_160 0.0 transcription factor TF Family: MBF1 ethylene-responsive transcriptional coactivator [Hevea brasiliensis]
2 Hb_005551_050 0.1822633735 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
3 Hb_002014_100 0.1835643736 - - sugar transporter, putative [Ricinus communis]
4 Hb_000987_120 0.1843773561 - - PREDICTED: protein SIEL [Jatropha curcas]
5 Hb_000109_250 0.1850798496 - - -
6 Hb_000252_150 0.192105611 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007590_050 0.1950169375 - - NudC domain-containing protein, putative [Ricinus communis]
8 Hb_003185_080 0.1952717502 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
9 Hb_015978_060 0.1953585886 - - unnamed protein product [Vitis vinifera]
10 Hb_185298_010 0.1965175826 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
11 Hb_002546_020 0.1979265003 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
12 Hb_000154_080 0.200811957 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
13 Hb_001143_130 0.201974603 - - peroxidase 2 [Hevea brasiliensis]
14 Hb_001541_270 0.2047599662 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
15 Hb_000307_090 0.2050339713 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
16 Hb_004306_100 0.2050968895 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
17 Hb_003963_010 0.2093408079 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004032_270 0.2099975707 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
19 Hb_009615_150 0.2108340372 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
20 Hb_001817_160 0.2115504868 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005946_160 Hb_005946_160 Hb_005551_050 Hb_005551_050 Hb_005946_160--Hb_005551_050 Hb_002014_100 Hb_002014_100 Hb_005946_160--Hb_002014_100 Hb_000987_120 Hb_000987_120 Hb_005946_160--Hb_000987_120 Hb_000109_250 Hb_000109_250 Hb_005946_160--Hb_000109_250 Hb_000252_150 Hb_000252_150 Hb_005946_160--Hb_000252_150 Hb_007590_050 Hb_007590_050 Hb_005946_160--Hb_007590_050 Hb_007426_180 Hb_007426_180 Hb_005551_050--Hb_007426_180 Hb_003376_350 Hb_003376_350 Hb_005551_050--Hb_003376_350 Hb_005653_060 Hb_005653_060 Hb_005551_050--Hb_005653_060 Hb_000679_090 Hb_000679_090 Hb_005551_050--Hb_000679_090 Hb_001564_080 Hb_001564_080 Hb_005551_050--Hb_001564_080 Hb_004032_270 Hb_004032_270 Hb_005551_050--Hb_004032_270 Hb_001269_630 Hb_001269_630 Hb_002014_100--Hb_001269_630 Hb_000788_090 Hb_000788_090 Hb_002014_100--Hb_000788_090 Hb_001442_020 Hb_001442_020 Hb_002014_100--Hb_001442_020 Hb_002110_120 Hb_002110_120 Hb_002014_100--Hb_002110_120 Hb_000368_010 Hb_000368_010 Hb_002014_100--Hb_000368_010 Hb_005463_030 Hb_005463_030 Hb_002014_100--Hb_005463_030 Hb_174865_030 Hb_174865_030 Hb_000987_120--Hb_174865_030 Hb_000307_090 Hb_000307_090 Hb_000987_120--Hb_000307_090 Hb_001722_100 Hb_001722_100 Hb_000987_120--Hb_001722_100 Hb_000522_080 Hb_000522_080 Hb_000987_120--Hb_000522_080 Hb_005736_060 Hb_005736_060 Hb_000987_120--Hb_005736_060 Hb_003185_080 Hb_003185_080 Hb_000987_120--Hb_003185_080 Hb_000300_640 Hb_000300_640 Hb_000109_250--Hb_000300_640 Hb_000987_070 Hb_000987_070 Hb_000109_250--Hb_000987_070 Hb_000705_210 Hb_000705_210 Hb_000109_250--Hb_000705_210 Hb_015978_060 Hb_015978_060 Hb_000109_250--Hb_015978_060 Hb_002030_040 Hb_002030_040 Hb_000109_250--Hb_002030_040 Hb_001366_190 Hb_001366_190 Hb_000109_250--Hb_001366_190 Hb_003747_220 Hb_003747_220 Hb_000252_150--Hb_003747_220 Hb_001143_130 Hb_001143_130 Hb_000252_150--Hb_001143_130 Hb_000529_020 Hb_000529_020 Hb_000252_150--Hb_000529_020 Hb_000252_150--Hb_007590_050 Hb_000179_070 Hb_000179_070 Hb_000252_150--Hb_000179_070 Hb_005928_110 Hb_005928_110 Hb_000252_150--Hb_005928_110 Hb_005357_030 Hb_005357_030 Hb_007590_050--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_007590_050--Hb_002685_170 Hb_000109_160 Hb_000109_160 Hb_007590_050--Hb_000109_160 Hb_000656_400 Hb_000656_400 Hb_007590_050--Hb_000656_400 Hb_020956_020 Hb_020956_020 Hb_007590_050--Hb_020956_020 Hb_003126_080 Hb_003126_080 Hb_007590_050--Hb_003126_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
125.653 436.037 31.618 201.416 381.582 207.557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
536.905 596.348 179.182 50.6966 115.989

CAGE analysis