Hb_005946_170

Information

Type -
Description -
Location Contig5946: 80898-84471
Sequence    

Annotation

kegg
ID rcu:RCOM_1053290
description hypothetical protein
nr
ID XP_012076667.1
description PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
swissprot
ID Q9LUV4
description FRIGIDA-like protein 4a OS=Arabidopsis thaliana GN=FRL4A PE=2 SV=1
trembl
ID A0A067KPE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07225 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50374: 80968-84369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005946_170 0.0 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
2 Hb_002813_010 0.0722883071 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
3 Hb_002477_150 0.082484556 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
4 Hb_001059_100 0.0872930614 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
5 Hb_148209_020 0.0877692859 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
6 Hb_000813_100 0.0888621823 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
7 Hb_004543_030 0.0898569969 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
8 Hb_000363_130 0.0903262193 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
9 Hb_000997_030 0.0937852621 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
10 Hb_002524_040 0.0942238588 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
11 Hb_161072_030 0.0947703612 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Jatropha curcas]
12 Hb_000865_080 0.0954474621 - - arsenite-resistance protein, putative [Ricinus communis]
13 Hb_030565_090 0.0968531169 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
14 Hb_011465_030 0.0977809135 - - PREDICTED: B2 protein [Jatropha curcas]
15 Hb_033883_060 0.0980108372 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
16 Hb_000264_100 0.098816508 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001157_180 0.0992081399 - - protein binding protein, putative [Ricinus communis]
18 Hb_004920_130 0.0999206859 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
19 Hb_000227_380 0.1000999076 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
20 Hb_144824_010 0.1005744564 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]

Gene co-expression network

sample Hb_005946_170 Hb_005946_170 Hb_002813_010 Hb_002813_010 Hb_005946_170--Hb_002813_010 Hb_002477_150 Hb_002477_150 Hb_005946_170--Hb_002477_150 Hb_001059_100 Hb_001059_100 Hb_005946_170--Hb_001059_100 Hb_148209_020 Hb_148209_020 Hb_005946_170--Hb_148209_020 Hb_000813_100 Hb_000813_100 Hb_005946_170--Hb_000813_100 Hb_004543_030 Hb_004543_030 Hb_005946_170--Hb_004543_030 Hb_001080_270 Hb_001080_270 Hb_002813_010--Hb_001080_270 Hb_000421_120 Hb_000421_120 Hb_002813_010--Hb_000421_120 Hb_000865_080 Hb_000865_080 Hb_002813_010--Hb_000865_080 Hb_002524_040 Hb_002524_040 Hb_002813_010--Hb_002524_040 Hb_004162_280 Hb_004162_280 Hb_002813_010--Hb_004162_280 Hb_011465_030 Hb_011465_030 Hb_002477_150--Hb_011465_030 Hb_002477_150--Hb_148209_020 Hb_000265_250 Hb_000265_250 Hb_002477_150--Hb_000265_250 Hb_002659_060 Hb_002659_060 Hb_002477_150--Hb_002659_060 Hb_001946_300 Hb_001946_300 Hb_002477_150--Hb_001946_300 Hb_000025_360 Hb_000025_360 Hb_001059_100--Hb_000025_360 Hb_001059_100--Hb_000865_080 Hb_007676_100 Hb_007676_100 Hb_001059_100--Hb_007676_100 Hb_000140_070 Hb_000140_070 Hb_001059_100--Hb_000140_070 Hb_000959_040 Hb_000959_040 Hb_001059_100--Hb_000959_040 Hb_000291_190 Hb_000291_190 Hb_001059_100--Hb_000291_190 Hb_002849_080 Hb_002849_080 Hb_148209_020--Hb_002849_080 Hb_012395_160 Hb_012395_160 Hb_148209_020--Hb_012395_160 Hb_006316_070 Hb_006316_070 Hb_148209_020--Hb_006316_070 Hb_002977_010 Hb_002977_010 Hb_148209_020--Hb_002977_010 Hb_005399_020 Hb_005399_020 Hb_148209_020--Hb_005399_020 Hb_000594_020 Hb_000594_020 Hb_000813_100--Hb_000594_020 Hb_000997_030 Hb_000997_030 Hb_000813_100--Hb_000997_030 Hb_004899_070 Hb_004899_070 Hb_000813_100--Hb_004899_070 Hb_147737_010 Hb_147737_010 Hb_000813_100--Hb_147737_010 Hb_000002_440 Hb_000002_440 Hb_000813_100--Hb_000002_440 Hb_000813_100--Hb_001946_300 Hb_034243_020 Hb_034243_020 Hb_004543_030--Hb_034243_020 Hb_007576_120 Hb_007576_120 Hb_004543_030--Hb_007576_120 Hb_004543_030--Hb_002524_040 Hb_004718_010 Hb_004718_010 Hb_004543_030--Hb_004718_010 Hb_004543_030--Hb_000997_030 Hb_010315_090 Hb_010315_090 Hb_004543_030--Hb_010315_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
109.76 143.662 22.5229 18.759 107.066 115.658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.2469 27.8506 52.3554 46.5936 36.89

CAGE analysis