Hb_005946_190

Information

Type -
Description -
Location Contig5946: 88807-89388
Sequence    

Annotation

kegg
ID rcu:RCOM_1053260
description hypothetical protein
nr
ID KCW79700.1
description hypothetical protein EUGRSUZ_C01051 [Eucalyptus grandis]
swissprot
ID O82337
description Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1
trembl
ID A0A059CP27
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01051 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005946_190 0.0 - - hypothetical protein EUGRSUZ_C01051 [Eucalyptus grandis]
2 Hb_005843_070 0.0617658789 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
3 Hb_005725_180 0.066423441 - - -
4 Hb_004157_080 0.0737565676 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
5 Hb_015978_040 0.0808872419 - - PREDICTED: uncharacterized protein LOC105642609 [Jatropha curcas]
6 Hb_001514_110 0.0863853303 - - conserved hypothetical protein [Ricinus communis]
7 Hb_022768_010 0.088546986 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
8 Hb_111908_010 0.0936731414 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_004117_360 0.0967430264 - - hypothetical protein JCGZ_00367 [Jatropha curcas]
10 Hb_012691_040 0.0992402069 - - PREDICTED: cytochrome P450 81E8-like [Fragaria vesca subsp. vesca]
11 Hb_110048_010 0.1109938461 - - PREDICTED: uncharacterized protein LOC104887199 [Beta vulgaris subsp. vulgaris]
12 Hb_001565_050 0.1120846437 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
13 Hb_142691_010 0.1155689408 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
14 Hb_034132_010 0.1164778256 - - hypothetical protein B456_007G015400 [Gossypium raimondii]
15 Hb_031862_150 0.1168298862 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
16 Hb_044026_010 0.1185053792 - - PREDICTED: cytochrome P450 93A3-like [Jatropha curcas]
17 Hb_147137_020 0.1195312068 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
18 Hb_073423_010 0.1199106556 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_008579_010 0.1222821857 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
20 Hb_002486_030 0.1233506024 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_005946_190 Hb_005946_190 Hb_005843_070 Hb_005843_070 Hb_005946_190--Hb_005843_070 Hb_005725_180 Hb_005725_180 Hb_005946_190--Hb_005725_180 Hb_004157_080 Hb_004157_080 Hb_005946_190--Hb_004157_080 Hb_015978_040 Hb_015978_040 Hb_005946_190--Hb_015978_040 Hb_001514_110 Hb_001514_110 Hb_005946_190--Hb_001514_110 Hb_022768_010 Hb_022768_010 Hb_005946_190--Hb_022768_010 Hb_005843_070--Hb_005725_180 Hb_005843_070--Hb_001514_110 Hb_005843_070--Hb_015978_040 Hb_111908_010 Hb_111908_010 Hb_005843_070--Hb_111908_010 Hb_012691_040 Hb_012691_040 Hb_005843_070--Hb_012691_040 Hb_005725_180--Hb_001514_110 Hb_005725_180--Hb_012691_040 Hb_004117_360 Hb_004117_360 Hb_005725_180--Hb_004117_360 Hb_005725_180--Hb_015978_040 Hb_005725_180--Hb_111908_010 Hb_004157_080--Hb_004117_360 Hb_004157_080--Hb_111908_010 Hb_004157_080--Hb_001514_110 Hb_004157_080--Hb_005725_180 Hb_044026_010 Hb_044026_010 Hb_004157_080--Hb_044026_010 Hb_034132_010 Hb_034132_010 Hb_015978_040--Hb_034132_010 Hb_015978_040--Hb_022768_010 Hb_032966_010 Hb_032966_010 Hb_015978_040--Hb_032966_010 Hb_001565_050 Hb_001565_050 Hb_015978_040--Hb_001565_050 Hb_001514_110--Hb_012691_040 Hb_001514_110--Hb_004117_360 Hb_073423_010 Hb_073423_010 Hb_001514_110--Hb_073423_010 Hb_142691_010 Hb_142691_010 Hb_001514_110--Hb_142691_010 Hb_002486_030 Hb_002486_030 Hb_001514_110--Hb_002486_030 Hb_031862_150 Hb_031862_150 Hb_022768_010--Hb_031862_150 Hb_022768_010--Hb_034132_010 Hb_022768_010--Hb_001565_050 Hb_022768_010--Hb_005725_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 281.257 41.7825 7.70987 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.17606 0 0.165307 1.18354

CAGE analysis