Hb_005946_200

Information

Type -
Description -
Location Contig5946: 90911-91096
Sequence    

Annotation

kegg
ID pop:POPTR_0006s16210g
description hypothetical protein
nr
ID XP_006381709.1
description hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9N7B2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s16210g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50376: 90955-91185
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005946_200 0.0 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
2 Hb_001221_050 0.068685057 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
3 Hb_002303_050 0.0713246712 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
4 Hb_002804_070 0.0756343396 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
5 Hb_006153_020 0.0839845841 - - vacuolar invertase [Manihot esculenta]
6 Hb_001022_070 0.0901240428 - - cell wall invertase [Manihot esculenta]
7 Hb_002811_320 0.0918668269 - - cation-transporting atpase plant, putative [Ricinus communis]
8 Hb_004474_070 0.0942598148 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
9 Hb_003427_020 0.0954249205 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
10 Hb_001953_010 0.0986891551 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
11 Hb_021576_160 0.1005085085 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
12 Hb_112145_010 0.1028054984 - - kinase, putative [Ricinus communis]
13 Hb_004374_170 0.1052906898 - - PREDICTED: gibberellin 20 oxidase 1-B [Jatropha curcas]
14 Hb_001333_030 0.1063416738 - - Abscisic acid 8'-hydroxylase 1 [Theobroma cacao]
15 Hb_155015_020 0.1078886548 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
16 Hb_002186_030 0.1122600807 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 isoform X1 [Populus euphratica]
17 Hb_128216_010 0.1142427737 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
18 Hb_001518_030 0.1200536019 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_001675_350 0.1219519033 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
20 Hb_006951_010 0.1228561785 - - PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Populus euphratica]

Gene co-expression network

sample Hb_005946_200 Hb_005946_200 Hb_001221_050 Hb_001221_050 Hb_005946_200--Hb_001221_050 Hb_002303_050 Hb_002303_050 Hb_005946_200--Hb_002303_050 Hb_002804_070 Hb_002804_070 Hb_005946_200--Hb_002804_070 Hb_006153_020 Hb_006153_020 Hb_005946_200--Hb_006153_020 Hb_001022_070 Hb_001022_070 Hb_005946_200--Hb_001022_070 Hb_002811_320 Hb_002811_320 Hb_005946_200--Hb_002811_320 Hb_003427_020 Hb_003427_020 Hb_001221_050--Hb_003427_020 Hb_021576_160 Hb_021576_160 Hb_001221_050--Hb_021576_160 Hb_001221_050--Hb_006153_020 Hb_001221_050--Hb_002804_070 Hb_001333_030 Hb_001333_030 Hb_001221_050--Hb_001333_030 Hb_004474_070 Hb_004474_070 Hb_002303_050--Hb_004474_070 Hb_001953_010 Hb_001953_010 Hb_002303_050--Hb_001953_010 Hb_001675_350 Hb_001675_350 Hb_002303_050--Hb_001675_350 Hb_002303_050--Hb_002804_070 Hb_128216_010 Hb_128216_010 Hb_002303_050--Hb_128216_010 Hb_002804_070--Hb_001953_010 Hb_004374_170 Hb_004374_170 Hb_002804_070--Hb_004374_170 Hb_000120_600 Hb_000120_600 Hb_002804_070--Hb_000120_600 Hb_002804_070--Hb_004474_070 Hb_004109_110 Hb_004109_110 Hb_006153_020--Hb_004109_110 Hb_006153_020--Hb_021576_160 Hb_006002_020 Hb_006002_020 Hb_006153_020--Hb_006002_020 Hb_006153_020--Hb_001333_030 Hb_000000_320 Hb_000000_320 Hb_001022_070--Hb_000000_320 Hb_001022_070--Hb_001953_010 Hb_001022_070--Hb_003427_020 Hb_001022_070--Hb_004474_070 Hb_001022_070--Hb_002303_050 Hb_155015_020 Hb_155015_020 Hb_002811_320--Hb_155015_020 Hb_001198_170 Hb_001198_170 Hb_002811_320--Hb_001198_170 Hb_001257_120 Hb_001257_120 Hb_002811_320--Hb_001257_120 Hb_112145_010 Hb_112145_010 Hb_002811_320--Hb_112145_010 Hb_004241_100 Hb_004241_100 Hb_002811_320--Hb_004241_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 65.5376 44.8879 97.7169 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.770453 16.0666

CAGE analysis