Hb_005946_210

Information

Type -
Description -
Location Contig5946: 92046-95358
Sequence    

Annotation

kegg
ID tcc:TCM_037898
description Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family isoform 1
nr
ID KDP33657.1
description hypothetical protein JCGZ_07228 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07228 PE=4 SV=1
Gene Ontology
ID GO:0005622
description late embryogenesis abundant hydroxyproline-rich glycoprotein family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50377: 92066-95276
cDNA
(Sanger)
(ID:Location)		 008_I18.ab1: 92233-95246 , 011_J06.ab1: 92213-95242 , 015_B10.ab1: 92267-95276 , 021_E04.ab1: 92336-95276 , 027_O23.ab1: 92222-95246 , 032_G21.ab1: 92321-95263 , 032_P09.ab1: 92225-95242 , 045_N17.ab1: 92280-95276 , 050_B23.ab1: 92749-95263

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005946_210 0.0 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
2 Hb_010272_010 0.0500131874 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
3 Hb_000664_110 0.0691607285 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
4 Hb_001109_060 0.0758017644 - - amino acid transporter, putative [Ricinus communis]
5 Hb_008226_090 0.076073972 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
6 Hb_012215_010 0.0762183643 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
7 Hb_002539_110 0.0767390594 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
8 Hb_005227_010 0.0777788132 - - PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
9 Hb_033286_010 0.0784349477 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
10 Hb_007800_020 0.0800986808 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
11 Hb_000322_070 0.0813211725 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
12 Hb_162275_040 0.0838420523 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000640_070 0.084718607 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
14 Hb_000362_170 0.0854949905 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
15 Hb_004109_230 0.086014818 - - heat shock protein binding protein, putative [Ricinus communis]
16 Hb_000007_280 0.0862060828 - - hypothetical protein VITISV_000066 [Vitis vinifera]
17 Hb_000365_330 0.0864897762 - - zinc finger protein, putative [Ricinus communis]
18 Hb_000692_150 0.0865259819 - - PREDICTED: probable prolyl 4-hydroxylase 3 [Jatropha curcas]
19 Hb_002014_040 0.0868481426 - - site-1 protease, putative [Ricinus communis]
20 Hb_000139_260 0.0870935719 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]

Gene co-expression network

sample Hb_005946_210 Hb_005946_210 Hb_010272_010 Hb_010272_010 Hb_005946_210--Hb_010272_010 Hb_000664_110 Hb_000664_110 Hb_005946_210--Hb_000664_110 Hb_001109_060 Hb_001109_060 Hb_005946_210--Hb_001109_060 Hb_008226_090 Hb_008226_090 Hb_005946_210--Hb_008226_090 Hb_012215_010 Hb_012215_010 Hb_005946_210--Hb_012215_010 Hb_002539_110 Hb_002539_110 Hb_005946_210--Hb_002539_110 Hb_010272_010--Hb_012215_010 Hb_010272_010--Hb_002539_110 Hb_000640_070 Hb_000640_070 Hb_010272_010--Hb_000640_070 Hb_010272_010--Hb_000664_110 Hb_002014_040 Hb_002014_040 Hb_010272_010--Hb_002014_040 Hb_000664_110--Hb_012215_010 Hb_000664_110--Hb_000640_070 Hb_000664_110--Hb_001109_060 Hb_000362_170 Hb_000362_170 Hb_000664_110--Hb_000362_170 Hb_000086_440 Hb_000086_440 Hb_001109_060--Hb_000086_440 Hb_005227_010 Hb_005227_010 Hb_001109_060--Hb_005227_010 Hb_162275_040 Hb_162275_040 Hb_001109_060--Hb_162275_040 Hb_017295_010 Hb_017295_010 Hb_001109_060--Hb_017295_010 Hb_005723_020 Hb_005723_020 Hb_008226_090--Hb_005723_020 Hb_008226_090--Hb_002014_040 Hb_008568_020 Hb_008568_020 Hb_008226_090--Hb_008568_020 Hb_001135_120 Hb_001135_120 Hb_008226_090--Hb_001135_120 Hb_103747_020 Hb_103747_020 Hb_008226_090--Hb_103747_020 Hb_003912_040 Hb_003912_040 Hb_008226_090--Hb_003912_040 Hb_012215_010--Hb_002539_110 Hb_012215_010--Hb_000640_070 Hb_012215_010--Hb_000362_170 Hb_001005_030 Hb_001005_030 Hb_012215_010--Hb_001005_030 Hb_002539_110--Hb_000362_170 Hb_005895_010 Hb_005895_010 Hb_002539_110--Hb_005895_010 Hb_002539_110--Hb_162275_040 Hb_013726_080 Hb_013726_080 Hb_002539_110--Hb_013726_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.8375 47.2093 45.1317 70.3863 62.4418 53.5056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4096 27.8135 29.5151 35.1869 43.4404

CAGE analysis