Hb_005951_010

Information

Type -
Description -
Location Contig5951: 3328-4077
Sequence    

Annotation

kegg
ID rcu:RCOM_1080770
description hypothetical protein
nr
ID XP_002514934.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SE37
description Protein RESTRICTED TEV MOVEMENT 1 OS=Arabidopsis thaliana GN=RTM1 PE=1 SV=1
trembl
ID B9RMG5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1080770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005951_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_157881_010 0.1249559061 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_002534_140 0.1283630957 - - hypothetical protein JCGZ_11629 [Jatropha curcas]
4 Hb_004342_040 0.1326035601 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
5 Hb_001976_070 0.1407085527 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
6 Hb_061335_010 0.1418008357 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
7 Hb_005057_020 0.1499024288 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
8 Hb_132880_020 0.1530039178 - - hypothetical protein VITISV_026364 [Vitis vinifera]
9 Hb_000696_120 0.1609086275 - - PREDICTED: protein FD [Populus euphratica]
10 Hb_179367_020 0.1634370995 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_122079_010 0.1644544568 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
12 Hb_000908_030 0.1650273373 - - small heat-shock protein, putative [Ricinus communis]
13 Hb_003878_130 0.1661452508 - - -
14 Hb_000039_080 0.1674493234 - - cyclin d, putative [Ricinus communis]
15 Hb_000009_100 0.1678447969 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
16 Hb_001006_080 0.1680908751 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
17 Hb_003216_010 0.1688700187 - - glycosyl hydrolase family protein [Populus trichocarpa]
18 Hb_001688_090 0.1693785849 - - alcohol dehydrogenase 7 [Vitis vinifera]
19 Hb_135592_010 0.1712638226 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004732_070 0.1735966673 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005951_010 Hb_005951_010 Hb_157881_010 Hb_157881_010 Hb_005951_010--Hb_157881_010 Hb_002534_140 Hb_002534_140 Hb_005951_010--Hb_002534_140 Hb_004342_040 Hb_004342_040 Hb_005951_010--Hb_004342_040 Hb_001976_070 Hb_001976_070 Hb_005951_010--Hb_001976_070 Hb_061335_010 Hb_061335_010 Hb_005951_010--Hb_061335_010 Hb_005057_020 Hb_005057_020 Hb_005951_010--Hb_005057_020 Hb_157881_010--Hb_004342_040 Hb_157881_010--Hb_001976_070 Hb_157881_010--Hb_061335_010 Hb_157881_010--Hb_005057_020 Hb_132880_020 Hb_132880_020 Hb_157881_010--Hb_132880_020 Hb_000696_120 Hb_000696_120 Hb_157881_010--Hb_000696_120 Hb_002534_140--Hb_061335_010 Hb_008895_010 Hb_008895_010 Hb_002534_140--Hb_008895_010 Hb_004324_180 Hb_004324_180 Hb_002534_140--Hb_004324_180 Hb_176760_010 Hb_176760_010 Hb_002534_140--Hb_176760_010 Hb_039046_010 Hb_039046_010 Hb_002534_140--Hb_039046_010 Hb_009615_140 Hb_009615_140 Hb_002534_140--Hb_009615_140 Hb_004342_040--Hb_005057_020 Hb_004342_040--Hb_061335_010 Hb_004342_040--Hb_000696_120 Hb_003216_010 Hb_003216_010 Hb_004342_040--Hb_003216_010 Hb_122079_010 Hb_122079_010 Hb_004342_040--Hb_122079_010 Hb_179367_020 Hb_179367_020 Hb_001976_070--Hb_179367_020 Hb_000908_030 Hb_000908_030 Hb_001976_070--Hb_000908_030 Hb_001976_070--Hb_132880_020 Hb_003878_130 Hb_003878_130 Hb_001976_070--Hb_003878_130 Hb_001152_040 Hb_001152_040 Hb_001976_070--Hb_001152_040 Hb_061335_010--Hb_122079_010 Hb_061335_010--Hb_005057_020 Hb_000053_150 Hb_000053_150 Hb_061335_010--Hb_000053_150 Hb_010812_080 Hb_010812_080 Hb_061335_010--Hb_010812_080 Hb_005057_020--Hb_003216_010 Hb_005057_020--Hb_000053_150 Hb_005057_020--Hb_000696_120 Hb_005057_020--Hb_122079_010 Hb_178968_010 Hb_178968_010 Hb_005057_020--Hb_178968_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.242568 0.474292 3.03431 8.61255 0 0.143134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis