Hb_005955_020

Information

Type -
Description -
Location Contig5955: 24960-38896
Sequence    

Annotation

kegg
ID rcu:RCOM_0724590
description ring finger containing protein, putative
nr
ID XP_002524891.1
description ring finger containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFX2
description Ring finger containing protein, putative OS=Ricinus communis GN=RCOM_0724590 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring finger containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50382: 25052-31922 , PASA_asmbl_50383: 30082-31920 , PASA_asmbl_50384: 29465-29604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005955_020 0.0 - - ring finger containing protein, putative [Ricinus communis]
2 Hb_000008_250 0.1158300238 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004650_070 0.128956067 - - -
4 Hb_026988_020 0.1290970694 - - outward rectifying K+ channel [Hevea brasiliensis]
5 Hb_001538_110 0.1303452434 - - PREDICTED: histone deacetylase 6, partial [Oryzias latipes]
6 Hb_005357_150 0.1311494863 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000085_310 0.1333847822 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
8 Hb_010638_020 0.1344459219 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
9 Hb_065500_050 0.1350225693 - - lipoate-protein ligase B, putative [Ricinus communis]
10 Hb_002716_070 0.1353591672 - - PREDICTED: protein ABIL2 [Jatropha curcas]
11 Hb_004108_050 0.1353841801 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
12 Hb_000291_210 0.1363984821 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
13 Hb_000627_120 0.1369043715 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
14 Hb_003408_030 0.1385694707 - - PREDICTED: protein YIF1B [Jatropha curcas]
15 Hb_001677_110 0.1396240486 - - Protein YIPF1, putative [Ricinus communis]
16 Hb_001946_320 0.1397260567 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
17 Hb_000809_050 0.1403417424 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639663 isoform X2 [Jatropha curcas]
18 Hb_000861_040 0.1406083364 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
19 Hb_010402_010 0.14438541 - - BnaC06g23470D [Brassica napus]
20 Hb_002735_060 0.1468940412 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_005955_020 Hb_005955_020 Hb_000008_250 Hb_000008_250 Hb_005955_020--Hb_000008_250 Hb_004650_070 Hb_004650_070 Hb_005955_020--Hb_004650_070 Hb_026988_020 Hb_026988_020 Hb_005955_020--Hb_026988_020 Hb_001538_110 Hb_001538_110 Hb_005955_020--Hb_001538_110 Hb_005357_150 Hb_005357_150 Hb_005955_020--Hb_005357_150 Hb_000085_310 Hb_000085_310 Hb_005955_020--Hb_000085_310 Hb_000008_250--Hb_001538_110 Hb_000436_050 Hb_000436_050 Hb_000008_250--Hb_000436_050 Hb_000291_210 Hb_000291_210 Hb_000008_250--Hb_000291_210 Hb_000402_200 Hb_000402_200 Hb_000008_250--Hb_000402_200 Hb_000634_100 Hb_000634_100 Hb_000008_250--Hb_000634_100 Hb_000809_050 Hb_000809_050 Hb_004650_070--Hb_000809_050 Hb_004650_070--Hb_000085_310 Hb_000733_030 Hb_000733_030 Hb_004650_070--Hb_000733_030 Hb_002662_100 Hb_002662_100 Hb_004650_070--Hb_002662_100 Hb_028872_050 Hb_028872_050 Hb_004650_070--Hb_028872_050 Hb_000983_100 Hb_000983_100 Hb_026988_020--Hb_000983_100 Hb_000956_010 Hb_000956_010 Hb_026988_020--Hb_000956_010 Hb_001366_230 Hb_001366_230 Hb_026988_020--Hb_001366_230 Hb_000861_040 Hb_000861_040 Hb_026988_020--Hb_000861_040 Hb_004108_050 Hb_004108_050 Hb_026988_020--Hb_004108_050 Hb_001677_110 Hb_001677_110 Hb_026988_020--Hb_001677_110 Hb_089140_100 Hb_089140_100 Hb_001538_110--Hb_089140_100 Hb_002918_200 Hb_002918_200 Hb_001538_110--Hb_002918_200 Hb_000648_060 Hb_000648_060 Hb_001538_110--Hb_000648_060 Hb_002716_070 Hb_002716_070 Hb_001538_110--Hb_002716_070 Hb_004837_140 Hb_004837_140 Hb_001538_110--Hb_004837_140 Hb_001981_090 Hb_001981_090 Hb_005357_150--Hb_001981_090 Hb_005357_150--Hb_004108_050 Hb_003057_120 Hb_003057_120 Hb_005357_150--Hb_003057_120 Hb_003151_050 Hb_003151_050 Hb_005357_150--Hb_003151_050 Hb_003408_030 Hb_003408_030 Hb_005357_150--Hb_003408_030 Hb_004800_160 Hb_004800_160 Hb_005357_150--Hb_004800_160 Hb_001366_220 Hb_001366_220 Hb_000085_310--Hb_001366_220 Hb_000085_310--Hb_004108_050 Hb_000809_040 Hb_000809_040 Hb_000085_310--Hb_000809_040 Hb_000085_310--Hb_001366_230 Hb_000085_310--Hb_002662_100 Hb_000085_310--Hb_005357_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.0748 2.96713 14.0282 15.5333 92.1711 35.8771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.7538 74.0648 113.326 20.0753 13.8361

CAGE analysis