Hb_005965_020

Information

Type -
Description -
Location Contig5965: 18075-20496
Sequence    

Annotation

kegg
ID rcu:RCOM_0820440
description hypothetical protein
nr
ID XP_002525234.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SGW5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0820440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50390: 17408-17840
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005965_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011099_010 0.1843602624 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_002571_040 0.2168243397 - - hypothetical protein RCOM_1321060 [Ricinus communis]
4 Hb_154600_010 0.2189636738 - - hypothetical protein JCGZ_17786 [Jatropha curcas]
5 Hb_000031_330 0.265379045 transcription factor TF Family: Orphans hypothetical protein POPTR_0157s00200g, partial [Populus trichocarpa]
6 Hb_001269_250 0.2812562411 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
7 Hb_002602_030 0.28726348 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
8 Hb_004242_210 0.295902868 - - PREDICTED: uncharacterized protein LOC105633248 [Jatropha curcas]
9 Hb_002217_490 0.2989680644 - - -
10 Hb_123301_010 0.3005345855 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000567_180 0.3010995232 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
12 Hb_002289_140 0.3023491414 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000953_080 0.304638194 - - PREDICTED: PAN domain-containing protein At5g03700 [Jatropha curcas]
14 Hb_000413_080 0.3048817086 - - -
15 Hb_000116_200 0.3054242419 transcription factor TF Family: HMG hypothetical protein POPTR_0005s10440g [Populus trichocarpa]
16 Hb_001754_160 0.3102927058 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
17 Hb_025048_020 0.3103199681 - - cytochrome P450, putative [Ricinus communis]
18 Hb_000112_100 0.3110032935 - - glutamate receptor 2 plant, putative [Ricinus communis]
19 Hb_002936_020 0.3113944176 - - hypothetical protein VITISV_001748 [Vitis vinifera]
20 Hb_000261_170 0.3114987921 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005965_020 Hb_005965_020 Hb_011099_010 Hb_011099_010 Hb_005965_020--Hb_011099_010 Hb_002571_040 Hb_002571_040 Hb_005965_020--Hb_002571_040 Hb_154600_010 Hb_154600_010 Hb_005965_020--Hb_154600_010 Hb_000031_330 Hb_000031_330 Hb_005965_020--Hb_000031_330 Hb_001269_250 Hb_001269_250 Hb_005965_020--Hb_001269_250 Hb_002602_030 Hb_002602_030 Hb_005965_020--Hb_002602_030 Hb_002936_020 Hb_002936_020 Hb_011099_010--Hb_002936_020 Hb_001754_160 Hb_001754_160 Hb_011099_010--Hb_001754_160 Hb_003266_070 Hb_003266_070 Hb_011099_010--Hb_003266_070 Hb_011099_010--Hb_000031_330 Hb_002289_140 Hb_002289_140 Hb_011099_010--Hb_002289_140 Hb_000216_010 Hb_000216_010 Hb_002571_040--Hb_000216_010 Hb_000772_060 Hb_000772_060 Hb_002571_040--Hb_000772_060 Hb_002918_130 Hb_002918_130 Hb_002571_040--Hb_002918_130 Hb_002571_040--Hb_011099_010 Hb_006503_010 Hb_006503_010 Hb_002571_040--Hb_006503_010 Hb_000116_200 Hb_000116_200 Hb_154600_010--Hb_000116_200 Hb_003376_370 Hb_003376_370 Hb_154600_010--Hb_003376_370 Hb_154600_010--Hb_000031_330 Hb_025048_020 Hb_025048_020 Hb_154600_010--Hb_025048_020 Hb_004774_030 Hb_004774_030 Hb_154600_010--Hb_004774_030 Hb_007382_090 Hb_007382_090 Hb_000031_330--Hb_007382_090 Hb_001195_210 Hb_001195_210 Hb_000031_330--Hb_001195_210 Hb_000953_080 Hb_000953_080 Hb_000031_330--Hb_000953_080 Hb_005217_070 Hb_005217_070 Hb_000031_330--Hb_005217_070 Hb_003740_030 Hb_003740_030 Hb_000031_330--Hb_003740_030 Hb_000031_330--Hb_000116_200 Hb_000599_310 Hb_000599_310 Hb_001269_250--Hb_000599_310 Hb_000886_030 Hb_000886_030 Hb_001269_250--Hb_000886_030 Hb_000261_170 Hb_000261_170 Hb_001269_250--Hb_000261_170 Hb_000089_200 Hb_000089_200 Hb_001269_250--Hb_000089_200 Hb_001269_250--Hb_011099_010 Hb_003178_020 Hb_003178_020 Hb_001269_250--Hb_003178_020 Hb_000175_470 Hb_000175_470 Hb_002602_030--Hb_000175_470 Hb_001148_100 Hb_001148_100 Hb_002602_030--Hb_001148_100 Hb_003813_060 Hb_003813_060 Hb_002602_030--Hb_003813_060 Hb_001053_210 Hb_001053_210 Hb_002602_030--Hb_001053_210 Hb_002539_040 Hb_002539_040 Hb_002602_030--Hb_002539_040 Hb_000062_090 Hb_000062_090 Hb_002602_030--Hb_000062_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.129992 0.150234 0.564336 0 0.0756013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.261367 0 0.143482 0

CAGE analysis