Hb_005970_010

Information

Type -
Description -
Location Contig5970: 11313-22818
Sequence    

Annotation

kegg
ID rcu:RCOM_1463690
description catalytic, putative
nr
ID XP_012082000.1
description PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X2 [Jatropha curcas]
swissprot
ID Q8VYP9
description Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 OS=Arabidopsis thaliana GN=ICMEL1 PE=2 SV=1
trembl
ID B9RL97
description Catalytic, putative OS=Ricinus communis GN=RCOM_1463690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50398: 11382-18488 , PASA_asmbl_50399: 18764-22374 , PASA_asmbl_50400: 20180-20497
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005970_010 0.0 - - PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X2 [Jatropha curcas]
2 Hb_001085_080 0.087398508 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
3 Hb_000000_120 0.093932732 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
4 Hb_012180_010 0.0990192228 - - PREDICTED: (S)-ureidoglycine aminohydrolase [Jatropha curcas]
5 Hb_001097_040 0.1012238132 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
6 Hb_003506_020 0.1029876195 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
7 Hb_028077_020 0.1039453793 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002739_120 0.1069827261 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
9 Hb_006683_020 0.108153382 - - PREDICTED: nucleosome assembly protein 1;4 [Jatropha curcas]
10 Hb_000152_700 0.1093455012 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
11 Hb_007137_050 0.1098222978 - - Uncharacterized protein isoform 1 [Theobroma cacao]
12 Hb_001014_190 0.1103835632 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
13 Hb_002995_040 0.111582597 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
14 Hb_001900_100 0.1130300723 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
15 Hb_000157_070 0.1137651188 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
16 Hb_022250_150 0.1141691124 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
17 Hb_003227_010 0.1149747882 - - PREDICTED: dynamin-related protein 1E-like [Jatropha curcas]
18 Hb_158845_060 0.1154880511 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
19 Hb_000579_130 0.1167219165 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_089140_040 0.1172800911 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]

Gene co-expression network

sample Hb_005970_010 Hb_005970_010 Hb_001085_080 Hb_001085_080 Hb_005970_010--Hb_001085_080 Hb_000000_120 Hb_000000_120 Hb_005970_010--Hb_000000_120 Hb_012180_010 Hb_012180_010 Hb_005970_010--Hb_012180_010 Hb_001097_040 Hb_001097_040 Hb_005970_010--Hb_001097_040 Hb_003506_020 Hb_003506_020 Hb_005970_010--Hb_003506_020 Hb_028077_020 Hb_028077_020 Hb_005970_010--Hb_028077_020 Hb_001085_080--Hb_001097_040 Hb_000579_130 Hb_000579_130 Hb_001085_080--Hb_000579_130 Hb_001558_040 Hb_001558_040 Hb_001085_080--Hb_001558_040 Hb_158845_060 Hb_158845_060 Hb_001085_080--Hb_158845_060 Hb_002739_120 Hb_002739_120 Hb_001085_080--Hb_002739_120 Hb_001811_170 Hb_001811_170 Hb_001085_080--Hb_001811_170 Hb_000000_120--Hb_003506_020 Hb_000220_080 Hb_000220_080 Hb_000000_120--Hb_000220_080 Hb_002072_010 Hb_002072_010 Hb_000000_120--Hb_002072_010 Hb_002316_170 Hb_002316_170 Hb_000000_120--Hb_002316_170 Hb_003125_180 Hb_003125_180 Hb_000000_120--Hb_003125_180 Hb_188063_050 Hb_188063_050 Hb_012180_010--Hb_188063_050 Hb_000098_050 Hb_000098_050 Hb_012180_010--Hb_000098_050 Hb_012180_010--Hb_001085_080 Hb_007137_050 Hb_007137_050 Hb_012180_010--Hb_007137_050 Hb_000622_110 Hb_000622_110 Hb_012180_010--Hb_000622_110 Hb_003038_040 Hb_003038_040 Hb_001097_040--Hb_003038_040 Hb_001097_040--Hb_007137_050 Hb_000023_300 Hb_000023_300 Hb_001097_040--Hb_000023_300 Hb_001159_030 Hb_001159_030 Hb_001097_040--Hb_001159_030 Hb_000152_700 Hb_000152_700 Hb_001097_040--Hb_000152_700 Hb_000216_020 Hb_000216_020 Hb_003506_020--Hb_000216_020 Hb_002122_080 Hb_002122_080 Hb_003506_020--Hb_002122_080 Hb_002151_100 Hb_002151_100 Hb_003506_020--Hb_002151_100 Hb_003506_020--Hb_028077_020 Hb_001103_090 Hb_001103_090 Hb_028077_020--Hb_001103_090 Hb_001675_320 Hb_001675_320 Hb_028077_020--Hb_001675_320 Hb_000705_180 Hb_000705_180 Hb_028077_020--Hb_000705_180 Hb_001009_150 Hb_001009_150 Hb_028077_020--Hb_001009_150 Hb_028077_020--Hb_001097_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.973524 3.40628 2.22689 5.86892 1.24014 1.39496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04814 1.11931 0.673077 4.66894 2.00108

CAGE analysis