Hb_005975_010

Information

Type -
Description -
Location Contig5975: 16624-28645
Sequence    

Annotation

kegg
ID rcu:RCOM_0461880
description [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative (EC:2.1.1.127)
nr
ID XP_002531659.1
description [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T090
description [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative OS=Ricinus communis GN=RCOM_0461880 PE=4 SV=1
Gene Ontology
ID GO:0008168
description set domain-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50403: 19560-19728 , PASA_asmbl_50404: 26424-27734 , PASA_asmbl_50405: 27867-28615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005975_010 0.0 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]
2 Hb_029142_030 0.0744959626 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
3 Hb_003579_050 0.0789672318 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
4 Hb_000002_120 0.07944766 - - PREDICTED: uncharacterized protein LOC105782064 [Gossypium raimondii]
5 Hb_000340_130 0.0859493488 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]
6 Hb_000224_150 0.0937453597 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial [Jatropha curcas]
7 Hb_065755_030 0.0943287505 - - -
8 Hb_011249_030 0.0995998152 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
9 Hb_000640_160 0.1005379228 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
10 Hb_162286_010 0.102156747 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
11 Hb_000757_030 0.1022622438 - - radical sam protein, putative [Ricinus communis]
12 Hb_004128_200 0.1028866953 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
13 Hb_000445_070 0.1029838908 - - PREDICTED: uncharacterized protein LOC105638998 [Jatropha curcas]
14 Hb_000085_190 0.1036287962 - - FtsZ1 protein [Manihot esculenta]
15 Hb_000300_180 0.1047010318 - - transcription initiation factor brf1, putative [Ricinus communis]
16 Hb_032202_080 0.1057343952 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
17 Hb_001956_040 0.1060442272 - - PREDICTED: PGR5-like protein 1B, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001186_090 0.1065956444 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
19 Hb_005731_110 0.1074999886 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
20 Hb_002498_140 0.1076654566 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]

Gene co-expression network

sample Hb_005975_010 Hb_005975_010 Hb_029142_030 Hb_029142_030 Hb_005975_010--Hb_029142_030 Hb_003579_050 Hb_003579_050 Hb_005975_010--Hb_003579_050 Hb_000002_120 Hb_000002_120 Hb_005975_010--Hb_000002_120 Hb_000340_130 Hb_000340_130 Hb_005975_010--Hb_000340_130 Hb_000224_150 Hb_000224_150 Hb_005975_010--Hb_000224_150 Hb_065755_030 Hb_065755_030 Hb_005975_010--Hb_065755_030 Hb_011249_030 Hb_011249_030 Hb_029142_030--Hb_011249_030 Hb_029142_030--Hb_000002_120 Hb_002255_040 Hb_002255_040 Hb_029142_030--Hb_002255_040 Hb_000436_100 Hb_000436_100 Hb_029142_030--Hb_000436_100 Hb_029142_030--Hb_000340_130 Hb_000260_680 Hb_000260_680 Hb_003579_050--Hb_000260_680 Hb_004128_200 Hb_004128_200 Hb_003579_050--Hb_004128_200 Hb_027073_030 Hb_027073_030 Hb_003579_050--Hb_027073_030 Hb_001776_060 Hb_001776_060 Hb_003579_050--Hb_001776_060 Hb_000107_030 Hb_000107_030 Hb_003579_050--Hb_000107_030 Hb_027472_120 Hb_027472_120 Hb_003579_050--Hb_027472_120 Hb_000002_120--Hb_003579_050 Hb_000371_010 Hb_000371_010 Hb_000002_120--Hb_000371_010 Hb_001662_040 Hb_001662_040 Hb_000002_120--Hb_001662_040 Hb_034243_040 Hb_034243_040 Hb_000002_120--Hb_034243_040 Hb_000098_140 Hb_000098_140 Hb_000002_120--Hb_000098_140 Hb_011386_050 Hb_011386_050 Hb_000340_130--Hb_011386_050 Hb_005649_100 Hb_005649_100 Hb_000340_130--Hb_005649_100 Hb_002686_080 Hb_002686_080 Hb_000340_130--Hb_002686_080 Hb_000012_270 Hb_000012_270 Hb_000340_130--Hb_000012_270 Hb_000340_130--Hb_000002_120 Hb_138435_010 Hb_138435_010 Hb_000224_150--Hb_138435_010 Hb_000457_230 Hb_000457_230 Hb_000224_150--Hb_000457_230 Hb_032202_080 Hb_032202_080 Hb_000224_150--Hb_032202_080 Hb_000224_150--Hb_000371_010 Hb_003186_020 Hb_003186_020 Hb_000224_150--Hb_003186_020 Hb_000640_160 Hb_000640_160 Hb_000224_150--Hb_000640_160 Hb_178968_140 Hb_178968_140 Hb_065755_030--Hb_178968_140 Hb_001328_030 Hb_001328_030 Hb_065755_030--Hb_001328_030 Hb_003760_030 Hb_003760_030 Hb_065755_030--Hb_003760_030 Hb_005731_110 Hb_005731_110 Hb_065755_030--Hb_005731_110 Hb_000959_220 Hb_000959_220 Hb_065755_030--Hb_000959_220 Hb_065755_030--Hb_001776_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.90521 1.83076 6.91451 1.70883 2.74968 2.68626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.21473 2.18443 1.65795 2.0671 2.71443

CAGE analysis