Hb_005975_020

Information

Type -
Description -
Location Contig5975: 31098-33899
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005975_020 0.0 - - -
2 Hb_000107_320 0.1157024748 - - hypothetical protein POPTR_0004s21930g [Populus trichocarpa]
3 Hb_004899_280 0.2200258855 - - -
4 Hb_003362_060 0.2372772048 - - -
5 Hb_131949_010 0.240911706 - - PREDICTED: uncharacterized protein LOC104227863, partial [Nicotiana sylvestris]
6 Hb_000171_040 0.2426880392 - - -
7 Hb_184798_040 0.2556817171 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
8 Hb_001999_190 0.2780421774 - - GDP-mannose transporter, putative [Ricinus communis]
9 Hb_004330_030 0.2827610286 - - -
10 Hb_008727_070 0.2924121821 - - PREDICTED: 16.9 kDa class I heat shock protein 1 isoform X1 [Zea mays]
11 Hb_084426_010 0.2947695293 - - -
12 Hb_009012_010 0.3044137245 - - -
13 Hb_015388_030 0.3111053629 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_006816_510 0.334392626 - - Pectinesterase inhibitor, putative [Ricinus communis]
15 Hb_012753_080 0.3348950564 - - -
16 Hb_034569_020 0.3360820582 - - -
17 Hb_000146_060 0.3417437554 - - -
18 Hb_000908_010 0.3501545845 - - Disease resistance protein RGA2, putative [Ricinus communis]
19 Hb_009742_010 0.3507673141 - - -
20 Hb_000025_550 0.3513122848 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005975_020 Hb_005975_020 Hb_000107_320 Hb_000107_320 Hb_005975_020--Hb_000107_320 Hb_004899_280 Hb_004899_280 Hb_005975_020--Hb_004899_280 Hb_003362_060 Hb_003362_060 Hb_005975_020--Hb_003362_060 Hb_131949_010 Hb_131949_010 Hb_005975_020--Hb_131949_010 Hb_000171_040 Hb_000171_040 Hb_005975_020--Hb_000171_040 Hb_184798_040 Hb_184798_040 Hb_005975_020--Hb_184798_040 Hb_001999_190 Hb_001999_190 Hb_000107_320--Hb_001999_190 Hb_000908_010 Hb_000908_010 Hb_000107_320--Hb_000908_010 Hb_009012_010 Hb_009012_010 Hb_000107_320--Hb_009012_010 Hb_015388_030 Hb_015388_030 Hb_000107_320--Hb_015388_030 Hb_012753_080 Hb_012753_080 Hb_000107_320--Hb_012753_080 Hb_034569_020 Hb_034569_020 Hb_004899_280--Hb_034569_020 Hb_000922_310 Hb_000922_310 Hb_004899_280--Hb_000922_310 Hb_004899_280--Hb_131949_010 Hb_009742_010 Hb_009742_010 Hb_004899_280--Hb_009742_010 Hb_004899_280--Hb_003362_060 Hb_003362_060--Hb_131949_010 Hb_084426_010 Hb_084426_010 Hb_003362_060--Hb_084426_010 Hb_003362_060--Hb_000171_040 Hb_003362_060--Hb_184798_040 Hb_003362_060--Hb_034569_020 Hb_131949_010--Hb_084426_010 Hb_131949_010--Hb_184798_040 Hb_131949_010--Hb_000171_040 Hb_131949_010--Hb_034569_020 Hb_006816_510 Hb_006816_510 Hb_000171_040--Hb_006816_510 Hb_000171_040--Hb_184798_040 Hb_000171_040--Hb_084426_010 Hb_184798_040--Hb_034569_020 Hb_184798_040--Hb_009742_010 Hb_184798_040--Hb_004899_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12202 0.146986 0 0 0.104379 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0407256 0

CAGE analysis