Hb_005976_010

Information

Type -
Description -
Location Contig5976: 14894-18507
Sequence    

Annotation

kegg
ID tcc:TCM_000642
description PLC-like phosphodiesterases superfamily protein isoform 1
nr
ID XP_012079242.1
description PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
swissprot
ID Q93XX5
description PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis thaliana GN=At5g67130 PE=1 SV=1
trembl
ID A0A067K6S3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12407 PE=4 SV=1
Gene Ontology
ID GO:0008081
description pi-plc x domain-containing protein at5g67130-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50408: 15184-16615 , PASA_asmbl_50409: 16662-18020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005976_010 0.0 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
2 Hb_000115_250 0.1027099104 - - PREDICTED: endonuclease 2 [Jatropha curcas]
3 Hb_000580_110 0.1437429641 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
4 Hb_000236_180 0.1512952319 - - serine hydroxymethyltransferase, putative [Ricinus communis]
5 Hb_029223_040 0.1537208961 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
6 Hb_000438_120 0.1560723944 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
7 Hb_012707_010 0.1607567947 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
8 Hb_000077_310 0.1628549713 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
9 Hb_000696_070 0.1692083129 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
10 Hb_000417_380 0.1720347283 - - SecY protein transport family protein [Theobroma cacao]
11 Hb_004957_050 0.1739102635 - - hypothetical protein POPTR_0010s12360g [Populus trichocarpa]
12 Hb_000808_150 0.1741702962 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
13 Hb_000077_360 0.1778044529 - - sugar transporter, putative [Ricinus communis]
14 Hb_002759_070 0.1778690503 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
15 Hb_000107_350 0.1783554454 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
16 Hb_003470_110 0.179603364 - - unnamed protein product [Vitis vinifera]
17 Hb_001621_100 0.181033713 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4 [Jatropha curcas]
18 Hb_000806_130 0.1838077383 - - Adenosine kinase 2 [Theobroma cacao]
19 Hb_003052_080 0.1847506829 desease resistance Gene Name: PRK PREDICTED: uridine-cytidine kinase C [Jatropha curcas]
20 Hb_001989_100 0.1896347 - - PREDICTED: uncharacterized protein LOC105636214 [Jatropha curcas]

Gene co-expression network

sample Hb_005976_010 Hb_005976_010 Hb_000115_250 Hb_000115_250 Hb_005976_010--Hb_000115_250 Hb_000580_110 Hb_000580_110 Hb_005976_010--Hb_000580_110 Hb_000236_180 Hb_000236_180 Hb_005976_010--Hb_000236_180 Hb_029223_040 Hb_029223_040 Hb_005976_010--Hb_029223_040 Hb_000438_120 Hb_000438_120 Hb_005976_010--Hb_000438_120 Hb_012707_010 Hb_012707_010 Hb_005976_010--Hb_012707_010 Hb_008143_040 Hb_008143_040 Hb_000115_250--Hb_008143_040 Hb_004957_050 Hb_004957_050 Hb_000115_250--Hb_004957_050 Hb_000115_250--Hb_000580_110 Hb_007590_100 Hb_007590_100 Hb_000115_250--Hb_007590_100 Hb_000115_250--Hb_029223_040 Hb_000580_110--Hb_000236_180 Hb_000417_380 Hb_000417_380 Hb_000580_110--Hb_000417_380 Hb_002495_030 Hb_002495_030 Hb_000580_110--Hb_002495_030 Hb_000077_310 Hb_000077_310 Hb_000580_110--Hb_000077_310 Hb_001195_380 Hb_001195_380 Hb_000580_110--Hb_001195_380 Hb_001493_060 Hb_001493_060 Hb_000580_110--Hb_001493_060 Hb_003470_110 Hb_003470_110 Hb_000236_180--Hb_003470_110 Hb_030565_100 Hb_030565_100 Hb_000236_180--Hb_030565_100 Hb_000236_180--Hb_000417_380 Hb_006615_230 Hb_006615_230 Hb_000236_180--Hb_006615_230 Hb_000077_100 Hb_000077_100 Hb_000236_180--Hb_000077_100 Hb_029223_040--Hb_030565_100 Hb_029223_040--Hb_000236_180 Hb_029223_040--Hb_000077_100 Hb_134014_010 Hb_134014_010 Hb_029223_040--Hb_134014_010 Hb_029223_040--Hb_003470_110 Hb_000806_130 Hb_000806_130 Hb_029223_040--Hb_000806_130 Hb_000107_350 Hb_000107_350 Hb_000438_120--Hb_000107_350 Hb_000649_040 Hb_000649_040 Hb_000438_120--Hb_000649_040 Hb_002759_070 Hb_002759_070 Hb_000438_120--Hb_002759_070 Hb_000808_150 Hb_000808_150 Hb_000438_120--Hb_000808_150 Hb_161396_010 Hb_161396_010 Hb_000438_120--Hb_161396_010 Hb_000950_030 Hb_000950_030 Hb_012707_010--Hb_000950_030 Hb_000696_070 Hb_000696_070 Hb_012707_010--Hb_000696_070 Hb_001486_350 Hb_001486_350 Hb_012707_010--Hb_001486_350 Hb_012707_010--Hb_000806_130 Hb_002157_270 Hb_002157_270 Hb_012707_010--Hb_002157_270 Hb_001989_100 Hb_001989_100 Hb_012707_010--Hb_001989_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0747541 0.844574 2.44956 13.6529 0.167666 0.0904009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.620769 2.05118 2.01905 3.65487 8.68647

CAGE analysis