Hb_005976_040

Information

Type -
Description -
Location Contig5976: 40725-41777
Sequence    

Annotation

kegg
ID rcu:RCOM_1409160
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_012079238.1
description PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
swissprot
ID Q9CAD5
description Mitogen-activated protein kinase kinase kinase YODA OS=Arabidopsis thaliana GN=YDA PE=1 SV=1
trembl
ID A0A067KAA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12404 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 001_E09.ab1: 41160-41929 , 039_I14.ab1: 41470-41929 , 051_A07.ab1: 41243-41929

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005976_040 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
2 Hb_006043_020 0.1198464468 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
3 Hb_018563_020 0.1236268772 transcription factor TF Family: ERF ethylene-responsive transcription factor 6 [Hevea brasiliensis]
4 Hb_002053_030 0.1350356668 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
5 Hb_000260_300 0.1386255749 - - calcium binding protein/cast, putative [Ricinus communis]
6 Hb_000836_160 0.1401806618 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
7 Hb_005496_070 0.1413597362 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
8 Hb_032920_040 0.1414757427 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
9 Hb_000532_030 0.1520170445 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
10 Hb_000805_150 0.1527343258 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
11 Hb_003023_080 0.1581825275 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
12 Hb_000345_500 0.1638052454 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
13 Hb_006538_030 0.1663630967 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
14 Hb_019026_030 0.1668294504 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
15 Hb_004079_040 0.1677779094 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
16 Hb_158926_010 0.1768074613 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
17 Hb_082225_010 0.1813390771 - - DWNN domain isoform 2 [Theobroma cacao]
18 Hb_001894_060 0.183998155 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
19 Hb_000086_610 0.1864520437 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
20 Hb_000776_050 0.1874381948 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]

Gene co-expression network

sample Hb_005976_040 Hb_005976_040 Hb_006043_020 Hb_006043_020 Hb_005976_040--Hb_006043_020 Hb_018563_020 Hb_018563_020 Hb_005976_040--Hb_018563_020 Hb_002053_030 Hb_002053_030 Hb_005976_040--Hb_002053_030 Hb_000260_300 Hb_000260_300 Hb_005976_040--Hb_000260_300 Hb_000836_160 Hb_000836_160 Hb_005976_040--Hb_000836_160 Hb_005496_070 Hb_005496_070 Hb_005976_040--Hb_005496_070 Hb_006043_020--Hb_002053_030 Hb_006043_020--Hb_000260_300 Hb_000345_500 Hb_000345_500 Hb_006043_020--Hb_000345_500 Hb_006043_020--Hb_018563_020 Hb_006538_030 Hb_006538_030 Hb_006043_020--Hb_006538_030 Hb_018563_020--Hb_000260_300 Hb_000086_610 Hb_000086_610 Hb_018563_020--Hb_000086_610 Hb_018563_020--Hb_000836_160 Hb_018563_020--Hb_006538_030 Hb_000776_050 Hb_000776_050 Hb_002053_030--Hb_000776_050 Hb_002053_030--Hb_000345_500 Hb_032920_040 Hb_032920_040 Hb_002053_030--Hb_032920_040 Hb_000373_250 Hb_000373_250 Hb_002053_030--Hb_000373_250 Hb_001863_270 Hb_001863_270 Hb_002053_030--Hb_001863_270 Hb_124677_020 Hb_124677_020 Hb_000260_300--Hb_124677_020 Hb_155946_030 Hb_155946_030 Hb_000260_300--Hb_155946_030 Hb_000336_060 Hb_000336_060 Hb_000260_300--Hb_000336_060 Hb_000836_160--Hb_032920_040 Hb_000836_160--Hb_006538_030 Hb_000045_140 Hb_000045_140 Hb_000836_160--Hb_000045_140 Hb_000532_030 Hb_000532_030 Hb_000836_160--Hb_000532_030 Hb_082225_010 Hb_082225_010 Hb_000836_160--Hb_082225_010 Hb_005496_070--Hb_006043_020 Hb_000139_100 Hb_000139_100 Hb_005496_070--Hb_000139_100 Hb_005496_070--Hb_000345_500 Hb_005496_070--Hb_018563_020 Hb_005496_070--Hb_002053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.50808 285.434 97.8282 113.018 0.643516 1.05056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.50764 32.4549 25.2027 3.55933 10.5169

CAGE analysis