Hb_005976_050

Information

Type -
Description -
Location Contig5976: 47874-49050
Sequence    

Annotation

kegg
ID rcu:RCOM_1408850
description RALFL33, putative
nr
ID XP_012079236.1
description PREDICTED: protein RALF-like 34 [Jatropha curcas]
swissprot
ID Q9FHA6
description Protein RALF-like 34 OS=Arabidopsis thaliana GN=RALFL34 PE=2 SV=1
trembl
ID A0A067KI40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12401 PE=4 SV=1
Gene Ontology
ID GO:0007154
description protein ralf-like 34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50411: 47647-48346
cDNA
(Sanger)
(ID:Location)		 018_G24.ab1: 47673-48346 , 022_L24.ab1: 47679-48332 , 037_N06.ab1: 47673-48346

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005976_050 0.0 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
2 Hb_010427_010 0.1226071194 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06191 [Jatropha curcas]
3 Hb_000212_310 0.1237928285 - - hypothetical protein JCGZ_24350 [Jatropha curcas]
4 Hb_000031_150 0.1419232906 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
5 Hb_007904_160 0.1427041668 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
6 Hb_000933_060 0.1458327984 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000330_100 0.1491307462 - - hypothetical protein VITISV_011650 [Vitis vinifera]
8 Hb_000928_020 0.1499703103 - - hypothetical protein CICLE_v10013682mg [Citrus clementina]
9 Hb_003050_390 0.1524427977 - - PREDICTED: uncharacterized protein LOC104442543 [Eucalyptus grandis]
10 Hb_006660_010 0.1525688249 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
11 Hb_000212_380 0.1597859521 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
12 Hb_000270_520 0.1621920422 - - PREDICTED: alpha-N-acetylglucosaminidase-like isoform X1 [Jatropha curcas]
13 Hb_148909_010 0.1631690617 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
14 Hb_003449_070 0.1638975158 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
15 Hb_007694_050 0.1666790432 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_004899_060 0.1679024483 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
17 Hb_001268_110 0.1686861274 - - PREDICTED: uncharacterized protein LOC105630183 isoform X2 [Jatropha curcas]
18 Hb_005321_020 0.1689047995 - - splicing factor-related family protein [Populus trichocarpa]
19 Hb_002811_060 0.168977543 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
20 Hb_002111_070 0.1691861669 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]

Gene co-expression network

sample Hb_005976_050 Hb_005976_050 Hb_010427_010 Hb_010427_010 Hb_005976_050--Hb_010427_010 Hb_000212_310 Hb_000212_310 Hb_005976_050--Hb_000212_310 Hb_000031_150 Hb_000031_150 Hb_005976_050--Hb_000031_150 Hb_007904_160 Hb_007904_160 Hb_005976_050--Hb_007904_160 Hb_000933_060 Hb_000933_060 Hb_005976_050--Hb_000933_060 Hb_000330_100 Hb_000330_100 Hb_005976_050--Hb_000330_100 Hb_006660_010 Hb_006660_010 Hb_010427_010--Hb_006660_010 Hb_003449_070 Hb_003449_070 Hb_010427_010--Hb_003449_070 Hb_011310_160 Hb_011310_160 Hb_010427_010--Hb_011310_160 Hb_010427_010--Hb_000212_310 Hb_003294_090 Hb_003294_090 Hb_010427_010--Hb_003294_090 Hb_005679_050 Hb_005679_050 Hb_010427_010--Hb_005679_050 Hb_000212_310--Hb_006660_010 Hb_002169_050 Hb_002169_050 Hb_000212_310--Hb_002169_050 Hb_000212_310--Hb_007904_160 Hb_002909_140 Hb_002909_140 Hb_000212_310--Hb_002909_140 Hb_000212_380 Hb_000212_380 Hb_000212_310--Hb_000212_380 Hb_004676_010 Hb_004676_010 Hb_000212_310--Hb_004676_010 Hb_002811_060 Hb_002811_060 Hb_000031_150--Hb_002811_060 Hb_000031_150--Hb_000933_060 Hb_001047_030 Hb_001047_030 Hb_000031_150--Hb_001047_030 Hb_004306_080 Hb_004306_080 Hb_000031_150--Hb_004306_080 Hb_003050_390 Hb_003050_390 Hb_000031_150--Hb_003050_390 Hb_001691_120 Hb_001691_120 Hb_000031_150--Hb_001691_120 Hb_000983_150 Hb_000983_150 Hb_007904_160--Hb_000983_150 Hb_000367_010 Hb_000367_010 Hb_007904_160--Hb_000367_010 Hb_000109_210 Hb_000109_210 Hb_007904_160--Hb_000109_210 Hb_143629_110 Hb_143629_110 Hb_007904_160--Hb_143629_110 Hb_000083_250 Hb_000083_250 Hb_007904_160--Hb_000083_250 Hb_050454_010 Hb_050454_010 Hb_000933_060--Hb_050454_010 Hb_044736_010 Hb_044736_010 Hb_000933_060--Hb_044736_010 Hb_003994_280 Hb_003994_280 Hb_000933_060--Hb_003994_280 Hb_001640_030 Hb_001640_030 Hb_000933_060--Hb_001640_030 Hb_001018_130 Hb_001018_130 Hb_000933_060--Hb_001018_130 Hb_001450_050 Hb_001450_050 Hb_000330_100--Hb_001450_050 Hb_000796_220 Hb_000796_220 Hb_000330_100--Hb_000796_220 Hb_002217_300 Hb_002217_300 Hb_000330_100--Hb_002217_300 Hb_046198_010 Hb_046198_010 Hb_000330_100--Hb_046198_010 Hb_000832_020 Hb_000832_020 Hb_000330_100--Hb_000832_020 Hb_028089_010 Hb_028089_010 Hb_000330_100--Hb_028089_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
87.7219 32.4466 25.9431 62.9509 38.5534 76.283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4683 23.2385 93.4164 66.5775 27.1477

CAGE analysis