Hb_005976_090

Information

Type -
Description -
Location Contig5976: 71696-74624
Sequence    

Annotation

kegg
ID rcu:RCOM_1408470
description DNA binding protein, putative
nr
ID XP_002523591.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID P93788
description Remorin OS=Solanum tuberosum PE=1 SV=1
trembl
ID B9SC72
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1408470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50414: 74135-74550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005976_090 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_016687_010 0.122986523 - - PREDICTED: uncharacterized protein LOC105637401 [Jatropha curcas]
3 Hb_003371_010 0.1347770698 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
4 Hb_004920_020 0.136430926 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
5 Hb_124677_010 0.139275217 - - conserved hypothetical protein [Ricinus communis]
6 Hb_126933_010 0.1400718407 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
7 Hb_000950_020 0.1408210174 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
8 Hb_000544_070 0.1431657862 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
9 Hb_061126_010 0.1450907616 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
10 Hb_080922_010 0.1466565278 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_010584_020 0.1469487658 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
12 Hb_008143_010 0.1473437512 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
13 Hb_000697_020 0.1488551722 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
14 Hb_000227_260 0.149878379 - - PREDICTED: RAN GTPase-activating protein 2 [Jatropha curcas]
15 Hb_003549_170 0.1518111926 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
16 Hb_000705_010 0.1523716914 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
17 Hb_003937_010 0.1535157513 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
18 Hb_005977_040 0.1543730934 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
19 Hb_012807_030 0.1543825506 - - PREDICTED: uncharacterized protein LOC105628042 isoform X1 [Jatropha curcas]
20 Hb_005527_070 0.1568965624 - - short-chain dehydrogenase/reductase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_005976_090 Hb_005976_090 Hb_016687_010 Hb_016687_010 Hb_005976_090--Hb_016687_010 Hb_003371_010 Hb_003371_010 Hb_005976_090--Hb_003371_010 Hb_004920_020 Hb_004920_020 Hb_005976_090--Hb_004920_020 Hb_124677_010 Hb_124677_010 Hb_005976_090--Hb_124677_010 Hb_126933_010 Hb_126933_010 Hb_005976_090--Hb_126933_010 Hb_000950_020 Hb_000950_020 Hb_005976_090--Hb_000950_020 Hb_000697_020 Hb_000697_020 Hb_016687_010--Hb_000697_020 Hb_003119_130 Hb_003119_130 Hb_016687_010--Hb_003119_130 Hb_003141_060 Hb_003141_060 Hb_016687_010--Hb_003141_060 Hb_008878_020 Hb_008878_020 Hb_016687_010--Hb_008878_020 Hb_001172_150 Hb_001172_150 Hb_016687_010--Hb_001172_150 Hb_061126_010 Hb_061126_010 Hb_016687_010--Hb_061126_010 Hb_000962_090 Hb_000962_090 Hb_003371_010--Hb_000962_090 Hb_001014_240 Hb_001014_240 Hb_003371_010--Hb_001014_240 Hb_000128_040 Hb_000128_040 Hb_003371_010--Hb_000128_040 Hb_003371_010--Hb_000950_020 Hb_015044_010 Hb_015044_010 Hb_003371_010--Hb_015044_010 Hb_003038_230 Hb_003038_230 Hb_003371_010--Hb_003038_230 Hb_004920_020--Hb_000128_040 Hb_004920_020--Hb_000950_020 Hb_005000_110 Hb_005000_110 Hb_004920_020--Hb_005000_110 Hb_000544_070 Hb_000544_070 Hb_004920_020--Hb_000544_070 Hb_005211_080 Hb_005211_080 Hb_004920_020--Hb_005211_080 Hb_000300_110 Hb_000300_110 Hb_004920_020--Hb_000300_110 Hb_101133_030 Hb_101133_030 Hb_124677_010--Hb_101133_030 Hb_012807_030 Hb_012807_030 Hb_124677_010--Hb_012807_030 Hb_000866_060 Hb_000866_060 Hb_124677_010--Hb_000866_060 Hb_124677_010--Hb_015044_010 Hb_000749_140 Hb_000749_140 Hb_124677_010--Hb_000749_140 Hb_124677_010--Hb_000128_040 Hb_001386_150 Hb_001386_150 Hb_126933_010--Hb_001386_150 Hb_005050_050 Hb_005050_050 Hb_126933_010--Hb_005050_050 Hb_126933_010--Hb_016687_010 Hb_002890_160 Hb_002890_160 Hb_126933_010--Hb_002890_160 Hb_126933_010--Hb_003371_010 Hb_006970_030 Hb_006970_030 Hb_000950_020--Hb_006970_030 Hb_000711_030 Hb_000711_030 Hb_000950_020--Hb_000711_030 Hb_002235_070 Hb_002235_070 Hb_000950_020--Hb_002235_070 Hb_001159_070 Hb_001159_070 Hb_000950_020--Hb_001159_070 Hb_000950_020--Hb_000544_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0381193 0.0762591 0.684633 0.149065 0.019112 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.082463 0.777468

CAGE analysis