Hb_005976_100

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig5976: 88755-90318
Sequence    

Annotation

kegg
ID pxb:103952098
description putative disease resistance RPP13-like protein 1
nr
ID XP_002523590.1
description hypothetical protein RCOM_1408460 [Ricinus communis]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID B9SC71
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1408460 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance rpp13-like protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005976_100 0.0 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
2 Hb_000692_050 0.0001124593 - - -
3 Hb_007426_020 0.0009979528 - - putative polyprotein [Oryza sativa Japonica Group]
4 Hb_000552_050 0.0011478124 - - -
5 Hb_005411_010 0.0018682328 - - -
6 Hb_011675_010 0.0021042132 - - -
7 Hb_135866_010 0.0023589253 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
8 Hb_001385_030 0.0024603295 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
9 Hb_015036_010 0.0024604462 - - -
10 Hb_118840_040 0.0025176744 - - -
11 Hb_056867_010 0.0025980599 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
12 Hb_160953_010 0.0030420142 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
13 Hb_003634_020 0.0031442285 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
14 Hb_187610_010 0.003471889 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
15 Hb_047387_010 0.003625582 - - -
16 Hb_000172_170 0.0036272997 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
17 Hb_001221_420 0.0037174371 - - Uncharacterized protein TCM_032186 [Theobroma cacao]
18 Hb_000005_200 0.0038241957 - - -
19 Hb_071517_010 0.0040696303 - - hypothetical protein CICLE_v10010288mg, partial [Citrus clementina]
20 Hb_006150_040 0.0048447923 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]

Gene co-expression network

sample Hb_005976_100 Hb_005976_100 Hb_000692_050 Hb_000692_050 Hb_005976_100--Hb_000692_050 Hb_007426_020 Hb_007426_020 Hb_005976_100--Hb_007426_020 Hb_000552_050 Hb_000552_050 Hb_005976_100--Hb_000552_050 Hb_005411_010 Hb_005411_010 Hb_005976_100--Hb_005411_010 Hb_011675_010 Hb_011675_010 Hb_005976_100--Hb_011675_010 Hb_135866_010 Hb_135866_010 Hb_005976_100--Hb_135866_010 Hb_000692_050--Hb_000552_050 Hb_000692_050--Hb_007426_020 Hb_000692_050--Hb_005411_010 Hb_000692_050--Hb_011675_010 Hb_001385_030 Hb_001385_030 Hb_000692_050--Hb_001385_030 Hb_007426_020--Hb_135866_010 Hb_118840_040 Hb_118840_040 Hb_007426_020--Hb_118840_040 Hb_056867_010 Hb_056867_010 Hb_007426_020--Hb_056867_010 Hb_007426_020--Hb_000552_050 Hb_000552_050--Hb_005411_010 Hb_000552_050--Hb_011675_010 Hb_000552_050--Hb_001385_030 Hb_015036_010 Hb_015036_010 Hb_000552_050--Hb_015036_010 Hb_005411_010--Hb_011675_010 Hb_005411_010--Hb_001385_030 Hb_005411_010--Hb_015036_010 Hb_160953_010 Hb_160953_010 Hb_005411_010--Hb_160953_010 Hb_003634_020 Hb_003634_020 Hb_005411_010--Hb_003634_020 Hb_011675_010--Hb_001385_030 Hb_011675_010--Hb_015036_010 Hb_011675_010--Hb_160953_010 Hb_011675_010--Hb_003634_020 Hb_135866_010--Hb_118840_040 Hb_135866_010--Hb_056867_010 Hb_047387_010 Hb_047387_010 Hb_135866_010--Hb_047387_010 Hb_001221_420 Hb_001221_420 Hb_135866_010--Hb_001221_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0180169 0.0908008

CAGE analysis