Hb_005977_040

Information

Type -
Description -
Location Contig5977: 11855-15984
Sequence    

Annotation

kegg
ID mtr:MTR_7g099390
description Photosystem I reaction center subunit IV A
nr
ID XP_003625462.1
description Photosystem I reaction center subunit IV A [Medicago truncatula]
swissprot
ID Q41228
description Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1
trembl
ID G7KZJ5
description Photosystem I reaction center subunit IV A OS=Medicago truncatula GN=MTR_7g099390 PE=2 SV=1
Gene Ontology
ID GO:0009535
description photosystem i reaction center subunit iv chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50419: 14991-16042 , PASA_asmbl_50420: 14292-16042
cDNA
(Sanger)
(ID:Location)		 006_L02.ab1: 15202-16008 , 030_L15.ab1: 15079-16008

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005977_040 0.0 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
2 Hb_002609_140 0.0704654655 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_074548_010 0.0970133609 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000544_070 0.0974495075 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
5 Hb_000161_010 0.1008242963 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
6 Hb_005523_040 0.1076743682 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
7 Hb_001257_110 0.1120314928 - - PREDICTED: uncharacterized protein LOC105636396 [Jatropha curcas]
8 Hb_002485_050 0.1125651501 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
9 Hb_107647_010 0.1146329871 - - PREDICTED: uncharacterized protein ycf39 [Jatropha curcas]
10 Hb_001584_050 0.1183063545 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
11 Hb_004306_090 0.1190998517 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
12 Hb_005433_020 0.1195139566 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
13 Hb_005210_010 0.1217618676 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
14 Hb_000856_280 0.1225516208 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
15 Hb_001517_010 0.1238775187 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003536_020 0.1259233662 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
17 Hb_002249_090 0.1262098182 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
18 Hb_002871_180 0.12707042 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
19 Hb_000116_090 0.1276231528 - - catalase [Hevea brasiliensis]
20 Hb_003373_050 0.1287661547 - - receptor protein kinase zmpk1, putative [Ricinus communis]

Gene co-expression network

sample Hb_005977_040 Hb_005977_040 Hb_002609_140 Hb_002609_140 Hb_005977_040--Hb_002609_140 Hb_074548_010 Hb_074548_010 Hb_005977_040--Hb_074548_010 Hb_000544_070 Hb_000544_070 Hb_005977_040--Hb_000544_070 Hb_000161_010 Hb_000161_010 Hb_005977_040--Hb_000161_010 Hb_005523_040 Hb_005523_040 Hb_005977_040--Hb_005523_040 Hb_001257_110 Hb_001257_110 Hb_005977_040--Hb_001257_110 Hb_002609_140--Hb_000544_070 Hb_002249_090 Hb_002249_090 Hb_002609_140--Hb_002249_090 Hb_004306_090 Hb_004306_090 Hb_002609_140--Hb_004306_090 Hb_107647_010 Hb_107647_010 Hb_002609_140--Hb_107647_010 Hb_117807_020 Hb_117807_020 Hb_002609_140--Hb_117807_020 Hb_003605_060 Hb_003605_060 Hb_074548_010--Hb_003605_060 Hb_002485_050 Hb_002485_050 Hb_074548_010--Hb_002485_050 Hb_074548_010--Hb_005523_040 Hb_074548_010--Hb_000544_070 Hb_002636_030 Hb_002636_030 Hb_074548_010--Hb_002636_030 Hb_000544_070--Hb_004306_090 Hb_000544_070--Hb_002485_050 Hb_007803_040 Hb_007803_040 Hb_000544_070--Hb_007803_040 Hb_004920_020 Hb_004920_020 Hb_000544_070--Hb_004920_020 Hb_000077_380 Hb_000077_380 Hb_000161_010--Hb_000077_380 Hb_000101_330 Hb_000101_330 Hb_000161_010--Hb_000101_330 Hb_000161_010--Hb_002609_140 Hb_001584_210 Hb_001584_210 Hb_000161_010--Hb_001584_210 Hb_007477_060 Hb_007477_060 Hb_000161_010--Hb_007477_060 Hb_001517_010 Hb_001517_010 Hb_005523_040--Hb_001517_010 Hb_005210_010 Hb_005210_010 Hb_005523_040--Hb_005210_010 Hb_000856_280 Hb_000856_280 Hb_005523_040--Hb_000856_280 Hb_005348_120 Hb_005348_120 Hb_005523_040--Hb_005348_120 Hb_001195_290 Hb_001195_290 Hb_005523_040--Hb_001195_290 Hb_001775_100 Hb_001775_100 Hb_001257_110--Hb_001775_100 Hb_005063_060 Hb_005063_060 Hb_001257_110--Hb_005063_060 Hb_001257_110--Hb_074548_010 Hb_002799_060 Hb_002799_060 Hb_001257_110--Hb_002799_060 Hb_001257_110--Hb_005523_040 Hb_003905_030 Hb_003905_030 Hb_001257_110--Hb_003905_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.4136 11.4615 65.9749 14.966 0.927877 1.00638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.588165 0.490869 1.17621 3.46431 119.671

CAGE analysis