Hb_005977_090

Information

Type -
Description -
Location Contig5977: 59056-63091
Sequence    

Annotation

kegg
ID rcu:RCOM_1004110
description hypothetical protein
nr
ID XP_012084231.1
description PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
swissprot
ID Q0WW40
description F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana GN=At1g16250 PE=2 SV=1
trembl
ID A0A067JVM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19106 PE=4 SV=1
Gene Ontology
ID GO:0005737
description f-box kelch-repeat protein at1g16250

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50428: 58723-63065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005977_090 0.0 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
2 Hb_028487_110 0.0457083089 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
3 Hb_001638_250 0.0588382963 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Jatropha curcas]
4 Hb_001866_110 0.0694455313 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
5 Hb_007586_030 0.0702511806 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
6 Hb_000803_300 0.0721764745 - - nuclear movement protein nudc, putative [Ricinus communis]
7 Hb_000522_090 0.072763238 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
8 Hb_000977_180 0.0731499236 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
9 Hb_004934_090 0.0742182524 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
10 Hb_002030_030 0.075575925 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
11 Hb_000005_380 0.0760004364 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
12 Hb_002200_130 0.0791300654 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
13 Hb_003362_040 0.0793605603 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
14 Hb_000179_020 0.0793799972 - - amidase, putative [Ricinus communis]
15 Hb_002798_040 0.0800522517 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
16 Hb_002150_030 0.0805169655 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
17 Hb_000244_250 0.0809829603 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
18 Hb_000034_050 0.0813889601 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
19 Hb_004724_200 0.0815541266 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
20 Hb_000134_090 0.0818904349 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005977_090 Hb_005977_090 Hb_028487_110 Hb_028487_110 Hb_005977_090--Hb_028487_110 Hb_001638_250 Hb_001638_250 Hb_005977_090--Hb_001638_250 Hb_001866_110 Hb_001866_110 Hb_005977_090--Hb_001866_110 Hb_007586_030 Hb_007586_030 Hb_005977_090--Hb_007586_030 Hb_000803_300 Hb_000803_300 Hb_005977_090--Hb_000803_300 Hb_000522_090 Hb_000522_090 Hb_005977_090--Hb_000522_090 Hb_028487_110--Hb_001638_250 Hb_009535_020 Hb_009535_020 Hb_028487_110--Hb_009535_020 Hb_000329_090 Hb_000329_090 Hb_028487_110--Hb_000329_090 Hb_000743_040 Hb_000743_040 Hb_028487_110--Hb_000743_040 Hb_000046_440 Hb_000046_440 Hb_028487_110--Hb_000046_440 Hb_004934_090 Hb_004934_090 Hb_001638_250--Hb_004934_090 Hb_001680_010 Hb_001680_010 Hb_001638_250--Hb_001680_010 Hb_000002_040 Hb_000002_040 Hb_001638_250--Hb_000002_040 Hb_001541_020 Hb_001541_020 Hb_001638_250--Hb_001541_020 Hb_000429_120 Hb_000429_120 Hb_001866_110--Hb_000429_120 Hb_000179_020 Hb_000179_020 Hb_001866_110--Hb_000179_020 Hb_002174_060 Hb_002174_060 Hb_001866_110--Hb_002174_060 Hb_003428_070 Hb_003428_070 Hb_001866_110--Hb_003428_070 Hb_000889_020 Hb_000889_020 Hb_001866_110--Hb_000889_020 Hb_000005_380 Hb_000005_380 Hb_007586_030--Hb_000005_380 Hb_000244_250 Hb_000244_250 Hb_007586_030--Hb_000244_250 Hb_000977_180 Hb_000977_180 Hb_007586_030--Hb_000977_180 Hb_006649_060 Hb_006649_060 Hb_007586_030--Hb_006649_060 Hb_123777_030 Hb_123777_030 Hb_007586_030--Hb_123777_030 Hb_002150_030 Hb_002150_030 Hb_007586_030--Hb_002150_030 Hb_002097_090 Hb_002097_090 Hb_000803_300--Hb_002097_090 Hb_002400_180 Hb_002400_180 Hb_000803_300--Hb_002400_180 Hb_000803_300--Hb_000522_090 Hb_005245_130 Hb_005245_130 Hb_000803_300--Hb_005245_130 Hb_009265_080 Hb_009265_080 Hb_000803_300--Hb_009265_080 Hb_000139_250 Hb_000139_250 Hb_000803_300--Hb_000139_250 Hb_000522_090--Hb_002097_090 Hb_000522_090--Hb_005245_130 Hb_000522_090--Hb_004934_090 Hb_002030_030 Hb_002030_030 Hb_000522_090--Hb_002030_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.1781 21.4555 8.53468 13.9609 47.3635 50.8573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.3232 17.2731 30.5375 19.3843 18.7848

CAGE analysis