Hb_005993_010

Information

Type -
Description -
Location Contig5993: 13004-16582
Sequence    

Annotation

kegg
ID gmx:100783637
description protein SEC13 homolog
nr
ID XP_012065190.1
description PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
swissprot
ID O64740
description Protein transport protein SEC13 homolog B OS=Arabidopsis thaliana GN=SEC13B PE=1 SV=1
trembl
ID A0A067LI06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20869 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50515: 12879-13459
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005993_010 0.0 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
2 Hb_001609_040 0.0512057588 - - hypothetical protein POPTR_0017s05650g [Populus trichocarpa]
3 Hb_185830_060 0.0802021786 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
4 Hb_000152_600 0.0860880105 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
5 Hb_004055_120 0.0888136657 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
6 Hb_000069_640 0.0950005528 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
7 Hb_000705_230 0.098750088 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
8 Hb_013394_050 0.1014932631 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
9 Hb_004607_090 0.1033201932 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
10 Hb_000742_020 0.1034337739 - - ARF GTPase activator, putative [Ricinus communis]
11 Hb_005701_120 0.1046010454 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
12 Hb_010672_020 0.1051219989 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
13 Hb_000402_130 0.1052403229 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
14 Hb_000796_150 0.105737901 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
15 Hb_001486_040 0.1061241923 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
16 Hb_019181_030 0.1066968681 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
17 Hb_000023_300 0.1070624319 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
18 Hb_002110_100 0.1090492259 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
19 Hb_000197_020 0.109943112 - - PREDICTED: protein RER1A [Jatropha curcas]
20 Hb_003878_200 0.1105139512 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]

Gene co-expression network

sample Hb_005993_010 Hb_005993_010 Hb_001609_040 Hb_001609_040 Hb_005993_010--Hb_001609_040 Hb_185830_060 Hb_185830_060 Hb_005993_010--Hb_185830_060 Hb_000152_600 Hb_000152_600 Hb_005993_010--Hb_000152_600 Hb_004055_120 Hb_004055_120 Hb_005993_010--Hb_004055_120 Hb_000069_640 Hb_000069_640 Hb_005993_010--Hb_000069_640 Hb_000705_230 Hb_000705_230 Hb_005993_010--Hb_000705_230 Hb_001609_040--Hb_004055_120 Hb_013394_050 Hb_013394_050 Hb_001609_040--Hb_013394_050 Hb_000742_020 Hb_000742_020 Hb_001609_040--Hb_000742_020 Hb_019181_030 Hb_019181_030 Hb_001609_040--Hb_019181_030 Hb_001609_040--Hb_000152_600 Hb_002193_060 Hb_002193_060 Hb_185830_060--Hb_002193_060 Hb_001486_040 Hb_001486_040 Hb_185830_060--Hb_001486_040 Hb_000395_110 Hb_000395_110 Hb_185830_060--Hb_000395_110 Hb_000665_180 Hb_000665_180 Hb_185830_060--Hb_000665_180 Hb_005701_120 Hb_005701_120 Hb_185830_060--Hb_005701_120 Hb_081599_010 Hb_081599_010 Hb_000152_600--Hb_081599_010 Hb_000072_300 Hb_000072_300 Hb_000152_600--Hb_000072_300 Hb_000152_600--Hb_019181_030 Hb_000130_270 Hb_000130_270 Hb_000152_600--Hb_000130_270 Hb_000152_600--Hb_000069_640 Hb_000256_150 Hb_000256_150 Hb_004055_120--Hb_000256_150 Hb_000787_160 Hb_000787_160 Hb_004055_120--Hb_000787_160 Hb_000197_020 Hb_000197_020 Hb_004055_120--Hb_000197_020 Hb_000917_130 Hb_000917_130 Hb_004055_120--Hb_000917_130 Hb_003998_040 Hb_003998_040 Hb_004055_120--Hb_003998_040 Hb_000300_270 Hb_000300_270 Hb_004055_120--Hb_000300_270 Hb_000080_130 Hb_000080_130 Hb_000069_640--Hb_000080_130 Hb_000603_160 Hb_000603_160 Hb_000069_640--Hb_000603_160 Hb_005653_070 Hb_005653_070 Hb_000069_640--Hb_005653_070 Hb_004754_050 Hb_004754_050 Hb_000069_640--Hb_004754_050 Hb_000069_640--Hb_000705_230 Hb_000069_640--Hb_013394_050 Hb_010672_020 Hb_010672_020 Hb_000705_230--Hb_010672_020 Hb_011310_110 Hb_011310_110 Hb_000705_230--Hb_011310_110 Hb_001633_200 Hb_001633_200 Hb_000705_230--Hb_001633_200 Hb_000703_190 Hb_000703_190 Hb_000705_230--Hb_000703_190 Hb_000705_230--Hb_000197_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7788 15.4031 21.619 50.3413 6.63749 11.2153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9514 21.5331 15.188 14.9799 24.9267

CAGE analysis