Hb_005993_020

Information

Type -
Description -
Location Contig5993: 27210-31626
Sequence    

Annotation

kegg
ID pop:POPTR_0005s23300g
description POPTRDRAFT_831592; hypothetical protein
nr
ID XP_012092212.1
description PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JN34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21906 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50519: 30383-33037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005993_020 0.0 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
2 Hb_001680_010 0.0338771999 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
3 Hb_002131_020 0.0631272739 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
4 Hb_001301_200 0.0633680465 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
5 Hb_011671_430 0.0686654797 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
6 Hb_005532_050 0.0717912756 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
7 Hb_000630_050 0.0719335732 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010931_120 0.0727304945 - - myosin heavy chain-related family protein [Populus trichocarpa]
9 Hb_006922_100 0.073866657 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
10 Hb_004837_040 0.0745825886 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
11 Hb_001252_010 0.0783363486 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
12 Hb_004888_020 0.0783456529 transcription factor TF Family: TCP PREDICTED: transcription factor TCP7-like [Jatropha curcas]
13 Hb_002835_370 0.0793691332 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
14 Hb_006586_050 0.081678424 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
15 Hb_000032_320 0.0821079894 - - protein binding protein, putative [Ricinus communis]
16 Hb_123352_020 0.0827285197 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
17 Hb_000134_090 0.08292298 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
18 Hb_001728_100 0.0833205699 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
19 Hb_001595_030 0.0833891518 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
20 Hb_000107_500 0.0836907089 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]

Gene co-expression network

sample Hb_005993_020 Hb_005993_020 Hb_001680_010 Hb_001680_010 Hb_005993_020--Hb_001680_010 Hb_002131_020 Hb_002131_020 Hb_005993_020--Hb_002131_020 Hb_001301_200 Hb_001301_200 Hb_005993_020--Hb_001301_200 Hb_011671_430 Hb_011671_430 Hb_005993_020--Hb_011671_430 Hb_005532_050 Hb_005532_050 Hb_005993_020--Hb_005532_050 Hb_000630_050 Hb_000630_050 Hb_005993_020--Hb_000630_050 Hb_001680_010--Hb_005532_050 Hb_001680_010--Hb_002131_020 Hb_001680_010--Hb_001301_200 Hb_002835_370 Hb_002835_370 Hb_001680_010--Hb_002835_370 Hb_001541_020 Hb_001541_020 Hb_001680_010--Hb_001541_020 Hb_000983_150 Hb_000983_150 Hb_002131_020--Hb_000983_150 Hb_002131_020--Hb_002835_370 Hb_010931_120 Hb_010931_120 Hb_002131_020--Hb_010931_120 Hb_009627_010 Hb_009627_010 Hb_002131_020--Hb_009627_010 Hb_007163_090 Hb_007163_090 Hb_001301_200--Hb_007163_090 Hb_023344_030 Hb_023344_030 Hb_001301_200--Hb_023344_030 Hb_004724_200 Hb_004724_200 Hb_001301_200--Hb_004724_200 Hb_004447_060 Hb_004447_060 Hb_001301_200--Hb_004447_060 Hb_048937_040 Hb_048937_040 Hb_001301_200--Hb_048937_040 Hb_000038_170 Hb_000038_170 Hb_011671_430--Hb_000038_170 Hb_004577_020 Hb_004577_020 Hb_011671_430--Hb_004577_020 Hb_014497_050 Hb_014497_050 Hb_011671_430--Hb_014497_050 Hb_003058_190 Hb_003058_190 Hb_011671_430--Hb_003058_190 Hb_004355_020 Hb_004355_020 Hb_011671_430--Hb_004355_020 Hb_003158_010 Hb_003158_010 Hb_011671_430--Hb_003158_010 Hb_003464_050 Hb_003464_050 Hb_005532_050--Hb_003464_050 Hb_005532_050--Hb_001301_200 Hb_001797_050 Hb_001797_050 Hb_005532_050--Hb_001797_050 Hb_008803_090 Hb_008803_090 Hb_005532_050--Hb_008803_090 Hb_005532_050--Hb_001541_020 Hb_000808_280 Hb_000808_280 Hb_000630_050--Hb_000808_280 Hb_106724_020 Hb_106724_020 Hb_000630_050--Hb_106724_020 Hb_000085_160 Hb_000085_160 Hb_000630_050--Hb_000085_160 Hb_006827_020 Hb_006827_020 Hb_000630_050--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000630_050--Hb_007317_110 Hb_000011_200 Hb_000011_200 Hb_000630_050--Hb_000011_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.58896 6.47983 2.84954 4.7471 8.0184 8.9885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.15101 4.62657 8.15933 4.70936 3.21474

CAGE analysis