Hb_005993_040

Information

Type -
Description -
Location Contig5993: 45861-49731
Sequence    

Annotation

kegg
ID rcu:RCOM_0646590
description WD-repeat protein, putative
nr
ID XP_012092210.1
description PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
swissprot
ID Q54UI3
description tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 OS=Dictyostelium discoideum GN=wdr4 PE=3 SV=1
trembl
ID A0A067JF70
description tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit OS=Jatropha curcas GN=JCGZ_21904 PE=3 SV=1
Gene Ontology
ID GO:0005634
description trna (guanine-n -)-methyltransferase non-catalytic subunit wdr4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50521: 45727-49214 , PASA_asmbl_50522: 49225-49649 , PASA_asmbl_50523: 49982-54987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005993_040 0.0 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
2 Hb_002043_190 0.0498955332 - - rwd domain-containing protein, putative [Ricinus communis]
3 Hb_002928_130 0.0513350474 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
4 Hb_011571_020 0.0608122674 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
5 Hb_011360_140 0.0619706763 - - 40S ribosomal protein S19, putative [Ricinus communis]
6 Hb_000392_440 0.0639489211 - - PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]
7 Hb_003126_080 0.0643115591 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
8 Hb_000661_250 0.0656289527 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
9 Hb_003050_080 0.0656752872 - - 40S ribosomal protein S14, putative [Ricinus communis]
10 Hb_002081_130 0.0665891838 - - serine carboxypeptidase, putative [Ricinus communis]
11 Hb_000656_400 0.0667695859 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
12 Hb_000920_180 0.0679333581 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
13 Hb_172632_090 0.0680280504 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
14 Hb_011689_080 0.0683776642 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
15 Hb_118707_030 0.0692310029 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
16 Hb_010921_010 0.0702129446 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
17 Hb_004491_010 0.0704683615 - - 60S ribosomal protein L51, putative [Ricinus communis]
18 Hb_000720_120 0.0717106168 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
19 Hb_063090_010 0.0720402497 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
20 Hb_001489_060 0.0727897099 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005993_040 Hb_005993_040 Hb_002043_190 Hb_002043_190 Hb_005993_040--Hb_002043_190 Hb_002928_130 Hb_002928_130 Hb_005993_040--Hb_002928_130 Hb_011571_020 Hb_011571_020 Hb_005993_040--Hb_011571_020 Hb_011360_140 Hb_011360_140 Hb_005993_040--Hb_011360_140 Hb_000392_440 Hb_000392_440 Hb_005993_040--Hb_000392_440 Hb_003126_080 Hb_003126_080 Hb_005993_040--Hb_003126_080 Hb_015746_010 Hb_015746_010 Hb_002043_190--Hb_015746_010 Hb_002081_130 Hb_002081_130 Hb_002043_190--Hb_002081_130 Hb_003126_050 Hb_003126_050 Hb_002043_190--Hb_003126_050 Hb_002233_150 Hb_002233_150 Hb_002043_190--Hb_002233_150 Hb_000041_270 Hb_000041_270 Hb_002043_190--Hb_000041_270 Hb_000015_080 Hb_000015_080 Hb_002928_130--Hb_000015_080 Hb_002232_440 Hb_002232_440 Hb_002928_130--Hb_002232_440 Hb_002928_130--Hb_000392_440 Hb_002346_020 Hb_002346_020 Hb_002928_130--Hb_002346_020 Hb_000331_080 Hb_000331_080 Hb_002928_130--Hb_000331_080 Hb_011571_020--Hb_011360_140 Hb_003001_140 Hb_003001_140 Hb_011571_020--Hb_003001_140 Hb_001301_160 Hb_001301_160 Hb_011571_020--Hb_001301_160 Hb_005332_070 Hb_005332_070 Hb_011571_020--Hb_005332_070 Hb_000473_040 Hb_000473_040 Hb_011571_020--Hb_000473_040 Hb_011360_140--Hb_000473_040 Hb_000933_180 Hb_000933_180 Hb_011360_140--Hb_000933_180 Hb_011360_140--Hb_000392_440 Hb_001828_090 Hb_001828_090 Hb_011360_140--Hb_001828_090 Hb_010661_030 Hb_010661_030 Hb_000392_440--Hb_010661_030 Hb_000392_440--Hb_000015_080 Hb_000392_440--Hb_011571_020 Hb_000656_400 Hb_000656_400 Hb_003126_080--Hb_000656_400 Hb_172632_090 Hb_172632_090 Hb_003126_080--Hb_172632_090 Hb_000205_160 Hb_000205_160 Hb_003126_080--Hb_000205_160 Hb_004491_010 Hb_004491_010 Hb_003126_080--Hb_004491_010 Hb_004223_280 Hb_004223_280 Hb_003126_080--Hb_004223_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.9264 9.0562 10.4351 6.07821 20.6175 21.0649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.621 28.5603 16.4673 12.7151 6.69992

CAGE analysis