Hb_005993_050

Information

Type -
Description -
Location Contig5993: 49927-55313
Sequence    

Annotation

kegg
ID rcu:RCOM_0646580
description Protein AFR, putative
nr
ID XP_002524761.1
description Protein AFR, putative [Ricinus communis]
swissprot
ID Q9M1W7
description F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana GN=SKIP30 PE=1 SV=2
trembl
ID B9SFJ2
description Protein AFR, putative OS=Ricinus communis GN=RCOM_0646580 PE=4 SV=1
Gene Ontology
ID GO:0003676
description f-box kelch-repeat protein skip30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50523: 49982-54987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005993_050 0.0 - - Protein AFR, putative [Ricinus communis]
2 Hb_000029_050 0.0585955363 - - expressed protein, putative [Ricinus communis]
3 Hb_138596_010 0.0586721271 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
4 Hb_004055_150 0.0596251491 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003609_030 0.0614562704 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
6 Hb_003680_150 0.0653258809 - - srpk, putative [Ricinus communis]
7 Hb_000853_230 0.0654728035 - - syntaxin, putative [Ricinus communis]
8 Hb_006831_110 0.0657016107 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
9 Hb_000502_050 0.0665615835 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
10 Hb_005779_080 0.0668236334 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
11 Hb_033720_010 0.0670188637 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
12 Hb_001926_030 0.0677373186 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
13 Hb_001409_020 0.0687585906 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
14 Hb_000915_020 0.069513715 - - unnamed protein product [Vitis vinifera]
15 Hb_000009_090 0.069833019 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
16 Hb_002835_370 0.0716333989 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
17 Hb_000958_140 0.0717706006 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]
18 Hb_007007_060 0.0720119987 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
19 Hb_000544_090 0.0726840106 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
20 Hb_001047_220 0.0726857907 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]

Gene co-expression network

sample Hb_005993_050 Hb_005993_050 Hb_000029_050 Hb_000029_050 Hb_005993_050--Hb_000029_050 Hb_138596_010 Hb_138596_010 Hb_005993_050--Hb_138596_010 Hb_004055_150 Hb_004055_150 Hb_005993_050--Hb_004055_150 Hb_003609_030 Hb_003609_030 Hb_005993_050--Hb_003609_030 Hb_003680_150 Hb_003680_150 Hb_005993_050--Hb_003680_150 Hb_000853_230 Hb_000853_230 Hb_005993_050--Hb_000853_230 Hb_000165_250 Hb_000165_250 Hb_000029_050--Hb_000165_250 Hb_004221_020 Hb_004221_020 Hb_000029_050--Hb_004221_020 Hb_023386_020 Hb_023386_020 Hb_000029_050--Hb_023386_020 Hb_005779_080 Hb_005779_080 Hb_000029_050--Hb_005779_080 Hb_001409_020 Hb_001409_020 Hb_000029_050--Hb_001409_020 Hb_002267_140 Hb_002267_140 Hb_138596_010--Hb_002267_140 Hb_008695_110 Hb_008695_110 Hb_138596_010--Hb_008695_110 Hb_000479_220 Hb_000479_220 Hb_138596_010--Hb_000479_220 Hb_002843_120 Hb_002843_120 Hb_138596_010--Hb_002843_120 Hb_000343_250 Hb_000343_250 Hb_138596_010--Hb_000343_250 Hb_001926_030 Hb_001926_030 Hb_004055_150--Hb_001926_030 Hb_002686_250 Hb_002686_250 Hb_004055_150--Hb_002686_250 Hb_004055_150--Hb_000853_230 Hb_006620_020 Hb_006620_020 Hb_004055_150--Hb_006620_020 Hb_006960_050 Hb_006960_050 Hb_004055_150--Hb_006960_050 Hb_000562_090 Hb_000562_090 Hb_003609_030--Hb_000562_090 Hb_001252_010 Hb_001252_010 Hb_003609_030--Hb_001252_010 Hb_031527_020 Hb_031527_020 Hb_003609_030--Hb_031527_020 Hb_000179_030 Hb_000179_030 Hb_003609_030--Hb_000179_030 Hb_000502_050 Hb_000502_050 Hb_003609_030--Hb_000502_050 Hb_002823_030 Hb_002823_030 Hb_003680_150--Hb_002823_030 Hb_007576_110 Hb_007576_110 Hb_003680_150--Hb_007576_110 Hb_014361_070 Hb_014361_070 Hb_003680_150--Hb_014361_070 Hb_003680_150--Hb_000853_230 Hb_023480_010 Hb_023480_010 Hb_003680_150--Hb_023480_010 Hb_000484_030 Hb_000484_030 Hb_003680_150--Hb_000484_030 Hb_000853_230--Hb_006620_020 Hb_000879_200 Hb_000879_200 Hb_000853_230--Hb_000879_200 Hb_000390_180 Hb_000390_180 Hb_000853_230--Hb_000390_180 Hb_033720_010 Hb_033720_010 Hb_000853_230--Hb_033720_010 Hb_000853_230--Hb_001926_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2315 11.6787 8.81286 8.35746 13.8441 14.0789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.90929 8.55431 11.1878 7.33673 9.48081

CAGE analysis