Hb_006002_030

Information

Type -
Description -
Location Contig6002: 85672-95707
Sequence    

Annotation

kegg
ID rcu:RCOM_0707280
description hypothetical protein
nr
ID XP_012077196.1
description PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
swissprot
ID Q9SMY8
description F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana GN=FBL15 PE=2 SV=2
trembl
ID A0A067KCT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07602 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50557: 85706-95613 , PASA_asmbl_50558: 95115-95807 , PASA_asmbl_50559: 86515-86656
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006002_030 0.0 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
2 Hb_078477_040 0.0392487611 - - nuclear movement protein nudc, putative [Ricinus communis]
3 Hb_001278_060 0.0574531914 - - nucleotide binding protein, putative [Ricinus communis]
4 Hb_006829_090 0.0644668638 - - PREDICTED: protein MOS2 [Jatropha curcas]
5 Hb_000213_070 0.0689724753 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
6 Hb_003018_160 0.0726928393 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
7 Hb_002235_320 0.0736838922 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
8 Hb_022250_110 0.0745076353 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
9 Hb_000849_100 0.0748729552 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
10 Hb_002883_010 0.0755048694 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
11 Hb_002133_030 0.077420856 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
12 Hb_005462_020 0.0796211064 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
13 Hb_001489_070 0.08104195 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
14 Hb_000116_280 0.0820947992 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
15 Hb_001433_190 0.082223969 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
16 Hb_004225_130 0.0827482211 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
17 Hb_000331_190 0.0831597317 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
18 Hb_002652_040 0.0836820358 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
19 Hb_003716_020 0.0837020264 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
20 Hb_001396_290 0.084913562 - - hypothetical protein B456_005G166600 [Gossypium raimondii]

Gene co-expression network

sample Hb_006002_030 Hb_006002_030 Hb_078477_040 Hb_078477_040 Hb_006002_030--Hb_078477_040 Hb_001278_060 Hb_001278_060 Hb_006002_030--Hb_001278_060 Hb_006829_090 Hb_006829_090 Hb_006002_030--Hb_006829_090 Hb_000213_070 Hb_000213_070 Hb_006002_030--Hb_000213_070 Hb_003018_160 Hb_003018_160 Hb_006002_030--Hb_003018_160 Hb_002235_320 Hb_002235_320 Hb_006002_030--Hb_002235_320 Hb_005462_020 Hb_005462_020 Hb_078477_040--Hb_005462_020 Hb_078477_040--Hb_006829_090 Hb_078477_040--Hb_001278_060 Hb_001489_070 Hb_001489_070 Hb_078477_040--Hb_001489_070 Hb_022250_110 Hb_022250_110 Hb_078477_040--Hb_022250_110 Hb_007668_020 Hb_007668_020 Hb_001278_060--Hb_007668_020 Hb_001278_060--Hb_000213_070 Hb_005129_050 Hb_005129_050 Hb_001278_060--Hb_005129_050 Hb_001433_190 Hb_001433_190 Hb_001278_060--Hb_001433_190 Hb_000120_510 Hb_000120_510 Hb_006829_090--Hb_000120_510 Hb_001396_290 Hb_001396_290 Hb_006829_090--Hb_001396_290 Hb_002133_030 Hb_002133_030 Hb_006829_090--Hb_002133_030 Hb_006829_090--Hb_005462_020 Hb_000331_190 Hb_000331_190 Hb_000213_070--Hb_000331_190 Hb_002675_060 Hb_002675_060 Hb_000213_070--Hb_002675_060 Hb_000213_070--Hb_007668_020 Hb_000213_070--Hb_078477_040 Hb_011497_010 Hb_011497_010 Hb_003018_160--Hb_011497_010 Hb_001575_080 Hb_001575_080 Hb_003018_160--Hb_001575_080 Hb_006816_300 Hb_006816_300 Hb_003018_160--Hb_006816_300 Hb_000116_280 Hb_000116_280 Hb_003018_160--Hb_000116_280 Hb_002493_090 Hb_002493_090 Hb_003018_160--Hb_002493_090 Hb_001975_020 Hb_001975_020 Hb_003018_160--Hb_001975_020 Hb_004225_130 Hb_004225_130 Hb_002235_320--Hb_004225_130 Hb_002883_010 Hb_002883_010 Hb_002235_320--Hb_002883_010 Hb_000239_070 Hb_000239_070 Hb_002235_320--Hb_000239_070 Hb_007416_310 Hb_007416_310 Hb_002235_320--Hb_007416_310 Hb_001019_170 Hb_001019_170 Hb_002235_320--Hb_001019_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.2434 27.014 12.9131 12.5316 67.6477 62.3819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9077 9.34706 14.2759 19.421 8.75447

CAGE analysis