Hb_006002_040

Information

Type -
Description -
Location Contig6002: 97938-101206
Sequence    

Annotation

kegg
ID rcu:RCOM_0707290
description hypothetical protein
nr
ID XP_012077199.1
description PREDICTED: uncharacterized protein LOC105638085 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KP06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07601 PE=4 SV=1
Gene Ontology
ID GO:0009534
description PREDICTED: uncharacterized protein LOC105638085

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50560: 98081-98988 , PASA_asmbl_50561: 99037-99235 , PASA_asmbl_50562: 99046-100997 , PASA_asmbl_50563: 100341-100487
cDNA
(Sanger)
(ID:Location)		 006_G10r.ab1: 101564-104107

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006002_040 0.0 - - PREDICTED: uncharacterized protein LOC105638085 [Jatropha curcas]
2 Hb_003528_030 0.0766225387 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
3 Hb_000352_300 0.0833886604 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
4 Hb_000477_100 0.0841915873 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
5 Hb_000146_040 0.0884392899 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
6 Hb_007481_010 0.096574805 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
7 Hb_001434_080 0.0966361093 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
8 Hb_011282_060 0.1002665795 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
9 Hb_000460_080 0.1038981614 - - acyl-coenzyme A binding domain containing, putative [Ricinus communis]
10 Hb_000072_130 0.1053600238 - - hypothetical protein OsJ_28567 [Oryza sativa Japonica Group]
11 Hb_000333_110 0.1065478269 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000159_090 0.1066636837 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
13 Hb_001051_070 0.1070099705 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
14 Hb_001114_110 0.1074777118 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
15 Hb_003097_140 0.1077147997 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
16 Hb_004990_010 0.107780131 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
17 Hb_001679_050 0.1079762253 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
18 Hb_000046_500 0.1086924839 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
19 Hb_003683_020 0.1087918172 - - serine/threonine protein kinase, putative [Ricinus communis]
20 Hb_033286_010 0.1089050253 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]

Gene co-expression network

sample Hb_006002_040 Hb_006002_040 Hb_003528_030 Hb_003528_030 Hb_006002_040--Hb_003528_030 Hb_000352_300 Hb_000352_300 Hb_006002_040--Hb_000352_300 Hb_000477_100 Hb_000477_100 Hb_006002_040--Hb_000477_100 Hb_000146_040 Hb_000146_040 Hb_006002_040--Hb_000146_040 Hb_007481_010 Hb_007481_010 Hb_006002_040--Hb_007481_010 Hb_001434_080 Hb_001434_080 Hb_006002_040--Hb_001434_080 Hb_003528_030--Hb_007481_010 Hb_003528_030--Hb_000352_300 Hb_003683_020 Hb_003683_020 Hb_003528_030--Hb_003683_020 Hb_012498_010 Hb_012498_010 Hb_003528_030--Hb_012498_010 Hb_000477_050 Hb_000477_050 Hb_003528_030--Hb_000477_050 Hb_004990_010 Hb_004990_010 Hb_003528_030--Hb_004990_010 Hb_000352_300--Hb_007481_010 Hb_000184_070 Hb_000184_070 Hb_000352_300--Hb_000184_070 Hb_000352_300--Hb_000477_100 Hb_000046_500 Hb_000046_500 Hb_000352_300--Hb_000046_500 Hb_000352_300--Hb_003683_020 Hb_000477_100--Hb_007481_010 Hb_000477_100--Hb_000046_500 Hb_000477_100--Hb_000146_040 Hb_003097_140 Hb_003097_140 Hb_000477_100--Hb_003097_140 Hb_001051_070 Hb_001051_070 Hb_000477_100--Hb_001051_070 Hb_000140_350 Hb_000140_350 Hb_000146_040--Hb_000140_350 Hb_033286_010 Hb_033286_010 Hb_000146_040--Hb_033286_010 Hb_004102_170 Hb_004102_170 Hb_000146_040--Hb_004102_170 Hb_000146_040--Hb_007481_010 Hb_005797_010 Hb_005797_010 Hb_000146_040--Hb_005797_010 Hb_001269_330 Hb_001269_330 Hb_007481_010--Hb_001269_330 Hb_000256_150 Hb_000256_150 Hb_007481_010--Hb_000256_150 Hb_007481_010--Hb_000046_500 Hb_005663_110 Hb_005663_110 Hb_001434_080--Hb_005663_110 Hb_003544_030 Hb_003544_030 Hb_001434_080--Hb_003544_030 Hb_001500_140 Hb_001500_140 Hb_001434_080--Hb_001500_140 Hb_011016_050 Hb_011016_050 Hb_001434_080--Hb_011016_050 Hb_002989_020 Hb_002989_020 Hb_001434_080--Hb_002989_020 Hb_000327_250 Hb_000327_250 Hb_001434_080--Hb_000327_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03573 1.72087 2.41358 4.5774 2.05183 2.64893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.26194 2.10734 2.48907 3.52714 1.62119

CAGE analysis