Hb_006006_050

Information

Type -
Description -
Location Contig6006: 93784-95960
Sequence    

Annotation

kegg
ID sbi:SORBI_06g032260
description SORBIDRAFT_06g032260, Sb06g032260; hypothetical protein
nr
ID XP_012436148.1
description PREDICTED: methylthioribose kinase-like [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID M8CEA7
description Methylthioribose kinase OS=Aegilops tauschii GN=F775_28287 PE=3 SV=1
Gene Ontology
ID GO:0046522
description methylthioribose kinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50567: 93730-95969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006006_050 0.0 - - PREDICTED: methylthioribose kinase-like [Gossypium raimondii]
2 Hb_001369_170 0.098966674 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
3 Hb_000788_010 0.100642814 - - 40S ribosomal protein S16A [Hevea brasiliensis]
4 Hb_000997_190 0.1123555221 - - PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
5 Hb_001225_010 0.1151311972 - - unnamed protein product [Coffea canephora]
6 Hb_000282_070 0.1161362608 - - PREDICTED: protein REVERSION-TO-ETHYLENE SENSITIVITY1 [Jatropha curcas]
7 Hb_008772_010 0.1174839699 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000567_410 0.1258329462 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
9 Hb_003326_020 0.1287149876 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
10 Hb_000302_290 0.1289083257 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
11 Hb_001449_090 0.1308890788 - - PREDICTED: NHL repeat-containing protein 2 isoform X2 [Jatropha curcas]
12 Hb_000239_030 0.1341630082 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
13 Hb_001085_270 0.1345913524 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
14 Hb_006478_160 0.1346667321 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
15 Hb_005496_010 0.1377118489 - - PREDICTED: PXMP2/4 family protein 4 [Jatropha curcas]
16 Hb_000302_280 0.1395055977 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
17 Hb_000331_700 0.1401675386 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
18 Hb_001565_080 0.1403693466 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
19 Hb_001172_100 0.142244756 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
20 Hb_000115_230 0.142875893 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]

Gene co-expression network

sample Hb_006006_050 Hb_006006_050 Hb_001369_170 Hb_001369_170 Hb_006006_050--Hb_001369_170 Hb_000788_010 Hb_000788_010 Hb_006006_050--Hb_000788_010 Hb_000997_190 Hb_000997_190 Hb_006006_050--Hb_000997_190 Hb_001225_010 Hb_001225_010 Hb_006006_050--Hb_001225_010 Hb_000282_070 Hb_000282_070 Hb_006006_050--Hb_000282_070 Hb_008772_010 Hb_008772_010 Hb_006006_050--Hb_008772_010 Hb_001085_270 Hb_001085_270 Hb_001369_170--Hb_001085_270 Hb_001369_170--Hb_000788_010 Hb_000302_280 Hb_000302_280 Hb_001369_170--Hb_000302_280 Hb_000567_410 Hb_000567_410 Hb_001369_170--Hb_000567_410 Hb_004543_040 Hb_004543_040 Hb_001369_170--Hb_004543_040 Hb_006478_150 Hb_006478_150 Hb_001369_170--Hb_006478_150 Hb_006478_160 Hb_006478_160 Hb_000788_010--Hb_006478_160 Hb_000576_060 Hb_000576_060 Hb_000788_010--Hb_000576_060 Hb_000788_010--Hb_000567_410 Hb_000788_010--Hb_001085_270 Hb_002811_080 Hb_002811_080 Hb_000788_010--Hb_002811_080 Hb_001172_120 Hb_001172_120 Hb_000997_190--Hb_001172_120 Hb_001235_110 Hb_001235_110 Hb_000997_190--Hb_001235_110 Hb_000997_190--Hb_006478_160 Hb_000997_190--Hb_000567_410 Hb_002231_030 Hb_002231_030 Hb_000997_190--Hb_002231_030 Hb_001172_100 Hb_001172_100 Hb_001225_010--Hb_001172_100 Hb_003020_330 Hb_003020_330 Hb_001225_010--Hb_003020_330 Hb_000110_170 Hb_000110_170 Hb_001225_010--Hb_000110_170 Hb_000203_020 Hb_000203_020 Hb_001225_010--Hb_000203_020 Hb_001449_090 Hb_001449_090 Hb_001225_010--Hb_001449_090 Hb_000878_020 Hb_000878_020 Hb_001225_010--Hb_000878_020 Hb_003326_020 Hb_003326_020 Hb_000282_070--Hb_003326_020 Hb_146225_010 Hb_146225_010 Hb_000282_070--Hb_146225_010 Hb_001269_170 Hb_001269_170 Hb_000282_070--Hb_001269_170 Hb_007044_060 Hb_007044_060 Hb_000282_070--Hb_007044_060 Hb_002217_450 Hb_002217_450 Hb_000282_070--Hb_002217_450 Hb_008772_010--Hb_006478_160 Hb_150196_010 Hb_150196_010 Hb_008772_010--Hb_150196_010 Hb_012760_070 Hb_012760_070 Hb_008772_010--Hb_012760_070 Hb_000215_060 Hb_000215_060 Hb_008772_010--Hb_000215_060 Hb_000115_230 Hb_000115_230 Hb_008772_010--Hb_000115_230 Hb_000450_130 Hb_000450_130 Hb_008772_010--Hb_000450_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.97072 9.24678 6.40328 13.6032 8.93341 8.8245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0585 75.0635 33.981 20.9063 10.2342

CAGE analysis