Hb_006017_010

Information

Type -
Description -
Location Contig6017: 49221-52230
Sequence    

Annotation

kegg
ID rcu:RCOM_1033330
description S-adenosylmethionine-dependent methyltransferase, putative
nr
ID XP_012078118.1
description PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
swissprot
ID Q80Y20
description Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus GN=Alkbh8 PE=1 SV=1
trembl
ID A0A067KLS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12011 PE=4 SV=1
Gene Ontology
ID GO:0008175
description alkylated dna repair protein alkb homolog 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50588: 50942-52194 , PASA_asmbl_50589: 51690-52200
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006017_010 0.0 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
2 Hb_007416_330 0.064147479 - - PREDICTED: elongation factor 1-alpha isoform X1 [Jatropha curcas]
3 Hb_004117_260 0.0717409543 - - conserved hypothetical protein [Ricinus communis]
4 Hb_050622_050 0.0732996023 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
5 Hb_105105_020 0.0821924168 - - vacuolar protein sorting vps41, putative [Ricinus communis]
6 Hb_006915_030 0.0834722991 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
7 Hb_015934_040 0.0841138032 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
8 Hb_002809_050 0.084639818 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
9 Hb_006455_120 0.0847493929 - - n6-DNA-methyltransferase, putative [Ricinus communis]
10 Hb_000009_560 0.0863781701 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
11 Hb_008959_010 0.0880896592 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007894_110 0.0886045713 - - Heat-shock protein 105 kDa, putative [Ricinus communis]
13 Hb_000465_160 0.0886872939 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
14 Hb_023344_120 0.0887605235 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
15 Hb_006634_070 0.0889469067 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
16 Hb_005269_070 0.0889611065 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
17 Hb_164010_030 0.0891533512 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
18 Hb_000003_250 0.0892705726 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
19 Hb_000207_050 0.0900814259 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
20 Hb_005291_050 0.091046633 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006017_010 Hb_006017_010 Hb_007416_330 Hb_007416_330 Hb_006017_010--Hb_007416_330 Hb_004117_260 Hb_004117_260 Hb_006017_010--Hb_004117_260 Hb_050622_050 Hb_050622_050 Hb_006017_010--Hb_050622_050 Hb_105105_020 Hb_105105_020 Hb_006017_010--Hb_105105_020 Hb_006915_030 Hb_006915_030 Hb_006017_010--Hb_006915_030 Hb_015934_040 Hb_015934_040 Hb_006017_010--Hb_015934_040 Hb_007894_110 Hb_007894_110 Hb_007416_330--Hb_007894_110 Hb_001221_080 Hb_001221_080 Hb_007416_330--Hb_001221_080 Hb_109980_010 Hb_109980_010 Hb_007416_330--Hb_109980_010 Hb_001408_140 Hb_001408_140 Hb_007416_330--Hb_001408_140 Hb_114310_090 Hb_114310_090 Hb_007416_330--Hb_114310_090 Hb_000393_020 Hb_000393_020 Hb_004117_260--Hb_000393_020 Hb_003657_010 Hb_003657_010 Hb_004117_260--Hb_003657_010 Hb_004117_260--Hb_050622_050 Hb_000926_090 Hb_000926_090 Hb_004117_260--Hb_000926_090 Hb_001314_070 Hb_001314_070 Hb_004117_260--Hb_001314_070 Hb_001617_050 Hb_001617_050 Hb_050622_050--Hb_001617_050 Hb_000297_010 Hb_000297_010 Hb_050622_050--Hb_000297_010 Hb_002110_150 Hb_002110_150 Hb_050622_050--Hb_002110_150 Hb_001318_270 Hb_001318_270 Hb_050622_050--Hb_001318_270 Hb_013399_100 Hb_013399_100 Hb_105105_020--Hb_013399_100 Hb_000060_090 Hb_000060_090 Hb_105105_020--Hb_000060_090 Hb_009548_020 Hb_009548_020 Hb_105105_020--Hb_009548_020 Hb_105105_020--Hb_015934_040 Hb_016172_020 Hb_016172_020 Hb_105105_020--Hb_016172_020 Hb_010618_010 Hb_010618_010 Hb_105105_020--Hb_010618_010 Hb_001198_100 Hb_001198_100 Hb_006915_030--Hb_001198_100 Hb_002942_100 Hb_002942_100 Hb_006915_030--Hb_002942_100 Hb_000571_110 Hb_000571_110 Hb_006915_030--Hb_000571_110 Hb_000723_130 Hb_000723_130 Hb_006915_030--Hb_000723_130 Hb_006915_030--Hb_009548_020 Hb_004225_050 Hb_004225_050 Hb_006915_030--Hb_004225_050 Hb_015934_040--Hb_010618_010 Hb_015934_040--Hb_000297_010 Hb_000331_670 Hb_000331_670 Hb_015934_040--Hb_000331_670 Hb_010128_080 Hb_010128_080 Hb_015934_040--Hb_010128_080 Hb_000032_520 Hb_000032_520 Hb_015934_040--Hb_000032_520 Hb_001248_060 Hb_001248_060 Hb_015934_040--Hb_001248_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.31104 4.75298 5.62567 5.25219 4.9589 6.1867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.27112 5.62623 10.4517 4.99418 5.98109

CAGE analysis