Hb_006018_050

Information

Type -
Description -
Location Contig6018: 149589-152953
Sequence    

Annotation

kegg
ID rcu:RCOM_0174580
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012093082.1
description PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
swissprot
ID O81760
description Probable protein phosphatase 2C 63 OS=Arabidopsis thaliana GN=At4g33920 PE=2 SV=1
trembl
ID A0A067LB50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16296 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable protein phosphatase 2c 63

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50599: 149683-152976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006018_050 0.0 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
2 Hb_000072_190 0.1406580039 - - putative S-adenosylmethionine decarboxylase [Prunus dulcis]
3 Hb_001579_070 0.1529159976 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
4 Hb_031822_010 0.1600234354 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]
5 Hb_089140_110 0.1703647866 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
6 Hb_000162_130 0.1791090553 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003633_100 0.1796583854 - - hypoia-responsive family protein 1 [Hevea brasiliensis]
8 Hb_004631_200 0.1811126512 - - conserved hypothetical protein [Ricinus communis]
9 Hb_155946_030 0.1842682767 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
10 Hb_000003_240 0.1854355177 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002217_190 0.1910718587 - - invertase [Hevea brasiliensis]
12 Hb_040359_010 0.1950465216 - - triacylglycerol lipase, putative [Ricinus communis]
13 Hb_001519_060 0.1951344776 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
14 Hb_004994_250 0.1982420651 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
15 Hb_001269_460 0.2042854447 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
16 Hb_013358_020 0.2043116875 - - ccr4-associated factor, putative [Ricinus communis]
17 Hb_128486_010 0.2069961126 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
18 Hb_018790_050 0.2095848264 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
19 Hb_000959_020 0.2131650247 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_000749_070 0.2134278562 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]

Gene co-expression network

sample Hb_006018_050 Hb_006018_050 Hb_000072_190 Hb_000072_190 Hb_006018_050--Hb_000072_190 Hb_001579_070 Hb_001579_070 Hb_006018_050--Hb_001579_070 Hb_031822_010 Hb_031822_010 Hb_006018_050--Hb_031822_010 Hb_089140_110 Hb_089140_110 Hb_006018_050--Hb_089140_110 Hb_000162_130 Hb_000162_130 Hb_006018_050--Hb_000162_130 Hb_003633_100 Hb_003633_100 Hb_006018_050--Hb_003633_100 Hb_013358_020 Hb_013358_020 Hb_000072_190--Hb_013358_020 Hb_084849_010 Hb_084849_010 Hb_000072_190--Hb_084849_010 Hb_000072_190--Hb_031822_010 Hb_000749_070 Hb_000749_070 Hb_000072_190--Hb_000749_070 Hb_004631_200 Hb_004631_200 Hb_000072_190--Hb_004631_200 Hb_011930_120 Hb_011930_120 Hb_001579_070--Hb_011930_120 Hb_000003_240 Hb_000003_240 Hb_001579_070--Hb_000003_240 Hb_155946_030 Hb_155946_030 Hb_001579_070--Hb_155946_030 Hb_001519_060 Hb_001519_060 Hb_001579_070--Hb_001519_060 Hb_000680_180 Hb_000680_180 Hb_001579_070--Hb_000680_180 Hb_031108_010 Hb_031108_010 Hb_001579_070--Hb_031108_010 Hb_003147_070 Hb_003147_070 Hb_031822_010--Hb_003147_070 Hb_000046_310 Hb_000046_310 Hb_031822_010--Hb_000046_310 Hb_004994_250 Hb_004994_250 Hb_031822_010--Hb_004994_250 Hb_018790_050 Hb_018790_050 Hb_031822_010--Hb_018790_050 Hb_031822_010--Hb_013358_020 Hb_089140_110--Hb_003633_100 Hb_089140_110--Hb_000072_190 Hb_089140_110--Hb_031822_010 Hb_101146_010 Hb_101146_010 Hb_089140_110--Hb_101146_010 Hb_005701_110 Hb_005701_110 Hb_089140_110--Hb_005701_110 Hb_002007_070 Hb_002007_070 Hb_000162_130--Hb_002007_070 Hb_000162_130--Hb_155946_030 Hb_000162_130--Hb_001579_070 Hb_000959_020 Hb_000959_020 Hb_000162_130--Hb_000959_020 Hb_000162_130--Hb_000680_180 Hb_000162_130--Hb_000003_240 Hb_003633_100--Hb_031822_010 Hb_128486_010 Hb_128486_010 Hb_003633_100--Hb_128486_010 Hb_003633_100--Hb_005701_110 Hb_003633_100--Hb_000072_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.79069 131.815 155.92 85.5736 3.68364 7.0387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6786 69.9319 8.62735 4.06355 13.4162

CAGE analysis