Hb_006020_010

Information

Type -
Description -
Location Contig6020: 4525-7983
Sequence    

Annotation

kegg
ID pvu:PHAVU_004G0480000
description hypothetical protein
nr
ID XP_012073438.1
description PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NUC3
description JHL06P13.14 protein OS=Jatropha curcas GN=JHL06P13.14 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50606: 4628-5757 , PASA_asmbl_50607: 6840-7349 , PASA_asmbl_50608: 7627-7794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006020_010 0.0 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
2 Hb_000586_100 0.084993139 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000907_120 0.1016975299 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
4 Hb_003439_090 0.1028543492 - - kinase, putative [Ricinus communis]
5 Hb_000407_080 0.1073909329 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
6 Hb_000152_250 0.1076462978 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
7 Hb_006364_020 0.1079052661 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
8 Hb_013914_020 0.1109107613 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
9 Hb_000111_190 0.113220991 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
10 Hb_004635_040 0.1251796184 - - Polyprotein, putative [Solanum demissum]
11 Hb_130967_010 0.1291618896 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_134017_010 0.1304506313 - - kinase, putative [Ricinus communis]
13 Hb_068332_010 0.1306831933 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_002236_070 0.1316010843 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
15 Hb_008406_020 0.1328263394 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
16 Hb_183820_010 0.1333166105 - - Disease resistance protein RFL1, putative [Ricinus communis]
17 Hb_131662_010 0.1366844445 - - Insulin-degrading enzyme, putative [Ricinus communis]
18 Hb_003376_200 0.1374825467 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
19 Hb_005144_100 0.1387285553 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
20 Hb_010614_020 0.139086541 - - BnaC05g27570D [Brassica napus]

Gene co-expression network

sample Hb_006020_010 Hb_006020_010 Hb_000586_100 Hb_000586_100 Hb_006020_010--Hb_000586_100 Hb_000907_120 Hb_000907_120 Hb_006020_010--Hb_000907_120 Hb_003439_090 Hb_003439_090 Hb_006020_010--Hb_003439_090 Hb_000407_080 Hb_000407_080 Hb_006020_010--Hb_000407_080 Hb_000152_250 Hb_000152_250 Hb_006020_010--Hb_000152_250 Hb_006364_020 Hb_006364_020 Hb_006020_010--Hb_006364_020 Hb_013914_020 Hb_013914_020 Hb_000586_100--Hb_013914_020 Hb_000586_100--Hb_003439_090 Hb_000586_100--Hb_000407_080 Hb_000586_100--Hb_006364_020 Hb_003052_120 Hb_003052_120 Hb_000586_100--Hb_003052_120 Hb_000907_120--Hb_000152_250 Hb_008406_020 Hb_008406_020 Hb_000907_120--Hb_008406_020 Hb_000521_210 Hb_000521_210 Hb_000907_120--Hb_000521_210 Hb_000907_120--Hb_006364_020 Hb_000111_190 Hb_000111_190 Hb_000907_120--Hb_000111_190 Hb_003439_090--Hb_013914_020 Hb_134017_010 Hb_134017_010 Hb_003439_090--Hb_134017_010 Hb_000045_180 Hb_000045_180 Hb_003439_090--Hb_000045_180 Hb_003430_020 Hb_003430_020 Hb_003439_090--Hb_003430_020 Hb_003439_090--Hb_000407_080 Hb_000407_080--Hb_013914_020 Hb_009581_050 Hb_009581_050 Hb_000407_080--Hb_009581_050 Hb_000407_080--Hb_134017_010 Hb_003807_020 Hb_003807_020 Hb_000407_080--Hb_003807_020 Hb_015473_010 Hb_015473_010 Hb_000152_250--Hb_015473_010 Hb_002735_010 Hb_002735_010 Hb_000152_250--Hb_002735_010 Hb_000152_250--Hb_003439_090 Hb_000152_250--Hb_000521_210 Hb_006364_020--Hb_000111_190 Hb_001823_070 Hb_001823_070 Hb_006364_020--Hb_001823_070 Hb_130967_010 Hb_130967_010 Hb_006364_020--Hb_130967_010 Hb_006364_020--Hb_003439_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0697811 13.2239 3.00587 10.854 0.0193152 0.0174484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.101405 11.0855 0.828745

CAGE analysis