Hb_006028_020

Information

Type -
Description -
Location Contig6028: 12398-14829
Sequence    

Annotation

kegg
ID cam:101501093
description 60S ribosomal protein L38-like
nr
ID XP_004485978.1
description PREDICTED: 60S ribosomal protein L38-like [Cicer arietinum]
swissprot
ID O22860
description 60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1
trembl
ID B9RM38
description 60S ribosomal protein L38, putative OS=Ricinus communis GN=RCOM_1077580 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l38

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50622: 12322-15736
cDNA
(Sanger)
(ID:Location)		 001_O02.ab1: 12393-15736 , 023_B07.ab1: 12335-15737 , 039_F14.ab1: 12423-15736 , 040_K04.ab1: 12423-15728 , 042_A19.ab1: 12322-15737

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006028_020 0.0 - - PREDICTED: 60S ribosomal protein L38-like [Cicer arietinum]
2 Hb_002811_090 0.1237031623 - - 40S ribosomal protein S24A [Hevea brasiliensis]
3 Hb_027472_160 0.1290514498 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
4 Hb_132840_140 0.1321644112 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
5 Hb_001431_080 0.1410421164 - - 40S ribosomal protein S11, putative [Ricinus communis]
6 Hb_000139_430 0.1435330355 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
7 Hb_002686_180 0.1441934268 - - PREDICTED: early nodulin-93-like [Populus euphratica]
8 Hb_000212_210 0.158622711 - - unnamed protein product [Coffea canephora]
9 Hb_007245_080 0.1613759511 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
10 Hb_003057_020 0.1627656029 - - 40S ribosomal protein S23, putative [Ricinus communis]
11 Hb_001512_050 0.1642185606 - - copine, putative [Ricinus communis]
12 Hb_004223_040 0.1656300599 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
13 Hb_003058_080 0.1656828529 - - Chaperonin 10 isoform 1 [Theobroma cacao]
14 Hb_000289_070 0.1664898756 - - conserved hypothetical protein [Ricinus communis]
15 Hb_032717_020 0.167111371 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2 isoform X1 [Jatropha curcas]
16 Hb_000189_540 0.1686586861 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
17 Hb_000134_320 0.1690896827 - - hypothetical protein PRUPE_ppa013450mg [Prunus persica]
18 Hb_000676_310 0.1692592379 - - BnaC09g40680D [Brassica napus]
19 Hb_000576_060 0.1699763239 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
20 Hb_015299_030 0.1717752547 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]

Gene co-expression network

sample Hb_006028_020 Hb_006028_020 Hb_002811_090 Hb_002811_090 Hb_006028_020--Hb_002811_090 Hb_027472_160 Hb_027472_160 Hb_006028_020--Hb_027472_160 Hb_132840_140 Hb_132840_140 Hb_006028_020--Hb_132840_140 Hb_001431_080 Hb_001431_080 Hb_006028_020--Hb_001431_080 Hb_000139_430 Hb_000139_430 Hb_006028_020--Hb_000139_430 Hb_002686_180 Hb_002686_180 Hb_006028_020--Hb_002686_180 Hb_003057_020 Hb_003057_020 Hb_002811_090--Hb_003057_020 Hb_000212_210 Hb_000212_210 Hb_002811_090--Hb_000212_210 Hb_007120_090 Hb_007120_090 Hb_002811_090--Hb_007120_090 Hb_002811_090--Hb_027472_160 Hb_001789_050 Hb_001789_050 Hb_002811_090--Hb_001789_050 Hb_007245_080 Hb_007245_080 Hb_002811_090--Hb_007245_080 Hb_003020_330 Hb_003020_330 Hb_027472_160--Hb_003020_330 Hb_000645_140 Hb_000645_140 Hb_027472_160--Hb_000645_140 Hb_000915_120 Hb_000915_120 Hb_027472_160--Hb_000915_120 Hb_000948_220 Hb_000948_220 Hb_027472_160--Hb_000948_220 Hb_027472_160--Hb_007120_090 Hb_132840_140--Hb_001431_080 Hb_000134_320 Hb_000134_320 Hb_132840_140--Hb_000134_320 Hb_000676_310 Hb_000676_310 Hb_132840_140--Hb_000676_310 Hb_004223_040 Hb_004223_040 Hb_132840_140--Hb_004223_040 Hb_001188_030 Hb_001188_030 Hb_132840_140--Hb_001188_030 Hb_015299_030 Hb_015299_030 Hb_132840_140--Hb_015299_030 Hb_001431_080--Hb_001188_030 Hb_001718_030 Hb_001718_030 Hb_001431_080--Hb_001718_030 Hb_001431_080--Hb_015299_030 Hb_001431_080--Hb_000676_310 Hb_000676_390 Hb_000676_390 Hb_001431_080--Hb_000676_390 Hb_001512_050 Hb_001512_050 Hb_000139_430--Hb_001512_050 Hb_000139_430--Hb_027472_160 Hb_000139_430--Hb_000212_210 Hb_000139_430--Hb_007245_080 Hb_000139_430--Hb_002686_180 Hb_002686_180--Hb_000134_320 Hb_024074_010 Hb_024074_010 Hb_002686_180--Hb_024074_010 Hb_002686_180--Hb_015299_030 Hb_002686_180--Hb_001431_080 Hb_002686_180--Hb_132840_140 Hb_098315_020 Hb_098315_020 Hb_002686_180--Hb_098315_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.8783 18.3646 164.314 111.773 37.9784 56.0442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.8147 458.345 77.578 37.3739 30.0629

CAGE analysis