Hb_006029_010

Information

Type -
Description -
Location Contig6029: 1140-3376
Sequence    

Annotation

kegg
ID tcc:TCM_005823
description Cc-nbs-lrr resistance protein, putative isoform 1
nr
ID XP_011008281.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
swissprot
ID Q9LRR5
description Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1
trembl
ID A0A061E2V6
description Cc-nbs-lrr resistance protein, putative isoform 4 OS=Theobroma cacao GN=TCM_005823 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006029_010 0.0 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
2 Hb_000161_030 0.060594273 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
3 Hb_004156_060 0.0817336145 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
4 Hb_000491_080 0.085968441 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
5 Hb_007786_010 0.0877246932 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
6 Hb_182026_010 0.0905150935 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
7 Hb_000733_060 0.0914709515 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
8 Hb_154381_050 0.0930761844 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002818_040 0.0975351197 - - tRNA synthetase-related family protein [Populus trichocarpa]
10 Hb_000300_540 0.0976717483 - - PREDICTED: syntaxin-132 [Jatropha curcas]
11 Hb_005288_160 0.1016995909 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
12 Hb_007111_040 0.101806726 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
13 Hb_002172_030 0.1023473596 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
14 Hb_000208_290 0.1027411419 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
15 Hb_022256_040 0.1029636505 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
16 Hb_002377_050 0.1032385227 - - Agmatine deiminase, putative [Ricinus communis]
17 Hb_000230_110 0.1042963587 - - PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
18 Hb_000768_030 0.1046091171 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
19 Hb_001341_040 0.1057269249 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
20 Hb_002631_050 0.1063093131 - - membrane associated ring finger 1,8, putative [Ricinus communis]

Gene co-expression network

sample Hb_006029_010 Hb_006029_010 Hb_000161_030 Hb_000161_030 Hb_006029_010--Hb_000161_030 Hb_004156_060 Hb_004156_060 Hb_006029_010--Hb_004156_060 Hb_000491_080 Hb_000491_080 Hb_006029_010--Hb_000491_080 Hb_007786_010 Hb_007786_010 Hb_006029_010--Hb_007786_010 Hb_182026_010 Hb_182026_010 Hb_006029_010--Hb_182026_010 Hb_000733_060 Hb_000733_060 Hb_006029_010--Hb_000733_060 Hb_002818_040 Hb_002818_040 Hb_000161_030--Hb_002818_040 Hb_000078_130 Hb_000078_130 Hb_000161_030--Hb_000078_130 Hb_000161_030--Hb_000491_080 Hb_000413_130 Hb_000413_130 Hb_000161_030--Hb_000413_130 Hb_002377_050 Hb_002377_050 Hb_000161_030--Hb_002377_050 Hb_154381_050 Hb_154381_050 Hb_004156_060--Hb_154381_050 Hb_000208_290 Hb_000208_290 Hb_004156_060--Hb_000208_290 Hb_000230_110 Hb_000230_110 Hb_004156_060--Hb_000230_110 Hb_176022_020 Hb_176022_020 Hb_004156_060--Hb_176022_020 Hb_012055_020 Hb_012055_020 Hb_004156_060--Hb_012055_020 Hb_160818_010 Hb_160818_010 Hb_000491_080--Hb_160818_010 Hb_011316_030 Hb_011316_030 Hb_000491_080--Hb_011316_030 Hb_001776_080 Hb_001776_080 Hb_000491_080--Hb_001776_080 Hb_000491_080--Hb_002377_050 Hb_000491_080--Hb_002818_040 Hb_007786_010--Hb_002818_040 Hb_012977_010 Hb_012977_010 Hb_007786_010--Hb_012977_010 Hb_000300_540 Hb_000300_540 Hb_007786_010--Hb_000300_540 Hb_009421_100 Hb_009421_100 Hb_007786_010--Hb_009421_100 Hb_005725_070 Hb_005725_070 Hb_007786_010--Hb_005725_070 Hb_002997_100 Hb_002997_100 Hb_182026_010--Hb_002997_100 Hb_000340_510 Hb_000340_510 Hb_182026_010--Hb_000340_510 Hb_022256_040 Hb_022256_040 Hb_182026_010--Hb_022256_040 Hb_002631_050 Hb_002631_050 Hb_182026_010--Hb_002631_050 Hb_182026_010--Hb_002818_040 Hb_005288_160 Hb_005288_160 Hb_000733_060--Hb_005288_160 Hb_023226_060 Hb_023226_060 Hb_000733_060--Hb_023226_060 Hb_000733_060--Hb_002631_050 Hb_000733_060--Hb_022256_040 Hb_000768_030 Hb_000768_030 Hb_000733_060--Hb_000768_030 Hb_001001_160 Hb_001001_160 Hb_000733_060--Hb_001001_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.64993 1.73295 1.24732 1.39792 14.4829 10.3215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.0892 3.66143 6.47922 1.95935 0.60468

CAGE analysis