Hb_006029_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig6029: 4175-5276
Sequence    

Annotation

kegg
ID vvi:100852683
description putative disease resistance RPP13-like protein 1
nr
ID XP_010659188.1
description PREDICTED: putative disease resistance RPP13-like protein 1, partial [Vitis vinifera]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A061FQ12
description NB-ARC domain-containing disease resistance protein, putative OS=Theobroma cacao GN=TCM_043254 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006029_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1, partial [Vitis vinifera]
2 Hb_023610_010 0.1783576503 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000300_530 0.1795474307 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
4 Hb_098315_110 0.1878226199 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000176_170 0.1905852509 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
6 Hb_003768_040 0.1928963486 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_003125_050 0.1953346325 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
8 Hb_001102_110 0.1975877755 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Jatropha curcas]
9 Hb_000038_030 0.2023669612 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]
10 Hb_000369_060 0.202636691 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
11 Hb_130177_010 0.2046195827 - - hypothetical protein RCOM_0897890 [Ricinus communis]
12 Hb_000331_610 0.2060876031 - - hypothetical protein B456_003G108600 [Gossypium raimondii]
13 Hb_000395_140 0.2063840279 - - Oligopeptide transporter, putative [Ricinus communis]
14 Hb_002233_090 0.2073264749 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
15 Hb_006076_020 0.2088537894 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
16 Hb_005657_010 0.212043986 - - -
17 Hb_104812_030 0.2151856283 - - hypothetical protein POPTR_0178s00210g [Populus trichocarpa]
18 Hb_011457_110 0.2198049659 - - PREDICTED: protein NETWORKED 1D [Jatropha curcas]
19 Hb_008376_010 0.2222889497 - - -
20 Hb_019153_040 0.2222945012 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_006029_020 Hb_006029_020 Hb_023610_010 Hb_023610_010 Hb_006029_020--Hb_023610_010 Hb_000300_530 Hb_000300_530 Hb_006029_020--Hb_000300_530 Hb_098315_110 Hb_098315_110 Hb_006029_020--Hb_098315_110 Hb_000176_170 Hb_000176_170 Hb_006029_020--Hb_000176_170 Hb_003768_040 Hb_003768_040 Hb_006029_020--Hb_003768_040 Hb_003125_050 Hb_003125_050 Hb_006029_020--Hb_003125_050 Hb_023610_010--Hb_000300_530 Hb_004884_060 Hb_004884_060 Hb_023610_010--Hb_004884_060 Hb_023610_010--Hb_003125_050 Hb_023610_010--Hb_098315_110 Hb_095397_010 Hb_095397_010 Hb_023610_010--Hb_095397_010 Hb_004156_060 Hb_004156_060 Hb_023610_010--Hb_004156_060 Hb_000300_530--Hb_098315_110 Hb_000300_530--Hb_003125_050 Hb_012654_020 Hb_012654_020 Hb_000300_530--Hb_012654_020 Hb_011021_030 Hb_011021_030 Hb_000300_530--Hb_011021_030 Hb_154381_050 Hb_154381_050 Hb_000300_530--Hb_154381_050 Hb_001268_230 Hb_001268_230 Hb_098315_110--Hb_001268_230 Hb_004648_040 Hb_004648_040 Hb_098315_110--Hb_004648_040 Hb_000317_080 Hb_000317_080 Hb_098315_110--Hb_000317_080 Hb_130177_010 Hb_130177_010 Hb_098315_110--Hb_130177_010 Hb_006029_010 Hb_006029_010 Hb_098315_110--Hb_006029_010 Hb_004102_130 Hb_004102_130 Hb_000176_170--Hb_004102_130 Hb_000176_170--Hb_098315_110 Hb_000208_290 Hb_000208_290 Hb_000176_170--Hb_000208_290 Hb_011457_110 Hb_011457_110 Hb_000176_170--Hb_011457_110 Hb_000176_170--Hb_000300_530 Hb_000176_170--Hb_006029_010 Hb_000099_220 Hb_000099_220 Hb_003768_040--Hb_000099_220 Hb_003768_040--Hb_098315_110 Hb_002311_250 Hb_002311_250 Hb_003768_040--Hb_002311_250 Hb_001946_360 Hb_001946_360 Hb_003768_040--Hb_001946_360 Hb_003768_040--Hb_130177_010 Hb_000431_020 Hb_000431_020 Hb_003768_040--Hb_000431_020 Hb_000249_110 Hb_000249_110 Hb_003125_050--Hb_000249_110 Hb_005657_010 Hb_005657_010 Hb_003125_050--Hb_005657_010 Hb_003906_120 Hb_003906_120 Hb_003125_050--Hb_003906_120 Hb_001767_010 Hb_001767_010 Hb_003125_050--Hb_001767_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.23466 0.150613 0.0255449 0.060945 3.74575 1.24898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.515123 0.173573 2.08015 0.868536 0.34607

CAGE analysis