Hb_006031_010

Information

Type -
Description -
Location Contig6031: 13677-20400
Sequence    

Annotation

kegg
ID rcu:RCOM_1358850
description RNA binding protein, putative
nr
ID XP_012079034.1
description PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
swissprot
ID Q94KD0
description Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana GN=TAF15B PE=1 SV=1
trembl
ID B9S5B9
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_1358850 PE=4 SV=1
Gene Ontology
ID GO:0000166
description transcription initiation factor tfiid subunit 15b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50669: 16658-16836 , PASA_asmbl_50670: 13938-19551 , PASA_asmbl_50671: 16403-16603 , PASA_asmbl_50672: 18357-18456 , PASA_asmbl_50673: 18593-18921 , PASA_asmbl_50674: 13906-19090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006031_010 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
2 Hb_009486_090 0.0453480497 - - RNA binding protein, putative [Ricinus communis]
3 Hb_002007_110 0.0555493516 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
4 Hb_012244_020 0.0558481794 - - calpain, putative [Ricinus communis]
5 Hb_001377_100 0.0561331211 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
6 Hb_001951_170 0.0563394493 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
7 Hb_123531_010 0.0602699453 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
8 Hb_000934_210 0.0647637613 - - suppressor of ty, putative [Ricinus communis]
9 Hb_000363_300 0.0650218462 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
10 Hb_001124_050 0.0661574827 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
11 Hb_002357_070 0.0669402206 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
12 Hb_006531_020 0.0674882585 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
13 Hb_005186_040 0.0678866088 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
14 Hb_011174_020 0.0697761546 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
15 Hb_001133_030 0.0717299239 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
16 Hb_000925_090 0.0720084712 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
17 Hb_000009_410 0.0721756676 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
18 Hb_009486_170 0.0735467016 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
19 Hb_000331_580 0.0739299086 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
20 Hb_001925_060 0.0742268784 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_006031_010 Hb_006031_010 Hb_009486_090 Hb_009486_090 Hb_006031_010--Hb_009486_090 Hb_002007_110 Hb_002007_110 Hb_006031_010--Hb_002007_110 Hb_012244_020 Hb_012244_020 Hb_006031_010--Hb_012244_020 Hb_001377_100 Hb_001377_100 Hb_006031_010--Hb_001377_100 Hb_001951_170 Hb_001951_170 Hb_006031_010--Hb_001951_170 Hb_123531_010 Hb_123531_010 Hb_006031_010--Hb_123531_010 Hb_009486_090--Hb_001377_100 Hb_001124_050 Hb_001124_050 Hb_009486_090--Hb_001124_050 Hb_000196_060 Hb_000196_060 Hb_009486_090--Hb_000196_060 Hb_009486_090--Hb_001951_170 Hb_009486_170 Hb_009486_170 Hb_009486_090--Hb_009486_170 Hb_012055_110 Hb_012055_110 Hb_002007_110--Hb_012055_110 Hb_002007_110--Hb_123531_010 Hb_005832_010 Hb_005832_010 Hb_002007_110--Hb_005832_010 Hb_000331_580 Hb_000331_580 Hb_002007_110--Hb_000331_580 Hb_000066_150 Hb_000066_150 Hb_002007_110--Hb_000066_150 Hb_005186_040 Hb_005186_040 Hb_012244_020--Hb_005186_040 Hb_011174_020 Hb_011174_020 Hb_012244_020--Hb_011174_020 Hb_000363_300 Hb_000363_300 Hb_012244_020--Hb_000363_300 Hb_001648_020 Hb_001648_020 Hb_012244_020--Hb_001648_020 Hb_000925_090 Hb_000925_090 Hb_012244_020--Hb_000925_090 Hb_000934_210 Hb_000934_210 Hb_012244_020--Hb_000934_210 Hb_135572_010 Hb_135572_010 Hb_001377_100--Hb_135572_010 Hb_001377_100--Hb_005186_040 Hb_001377_100--Hb_012244_020 Hb_000059_230 Hb_000059_230 Hb_001377_100--Hb_000059_230 Hb_003216_090 Hb_003216_090 Hb_001951_170--Hb_003216_090 Hb_001951_170--Hb_005832_010 Hb_006531_020 Hb_006531_020 Hb_001951_170--Hb_006531_020 Hb_001951_170--Hb_002007_110 Hb_001951_170--Hb_000331_580 Hb_007245_020 Hb_007245_020 Hb_123531_010--Hb_007245_020 Hb_123531_010--Hb_000934_210 Hb_123531_010--Hb_000331_580 Hb_002357_070 Hb_002357_070 Hb_123531_010--Hb_002357_070 Hb_000172_340 Hb_000172_340 Hb_123531_010--Hb_000172_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1079 27.1135 13.123 15.2478 11.2309 17.6412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.50621 7.2942 10.1384 24.4645 27.7348

CAGE analysis