Hb_006040_010

Information

Type -
Description -
Location Contig6040: 4717-6025
Sequence    

Annotation

kegg
ID rcu:RCOM_Mp29
description cox3; cytochrome c oxidase subunit 3
nr
ID BAO50912.1
description cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
swissprot
ID P14853
description Cytochrome c oxidase subunit 3 OS=Glycine max GN=COX3 PE=2 SV=1
trembl
ID W6JNI3
description Cytochrome c oxidase subunit 3 OS=Hevea brasiliensis GN=cox3 PE=3 SV=1
Gene Ontology
ID GO:0004129
description cytochrome c oxidase subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006040_010 0.0 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
2 Hb_006040_020 0.0586494253 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
3 Hb_008085_020 0.07644862 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
4 Hb_006040_030 0.0778541269 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
5 Hb_171685_080 0.08312612 - - unknown [Allium cepa]
6 Hb_007645_020 0.0893849276 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
7 Hb_003688_030 0.0973346985 - - NADH dehydrogenase 2-like ORF 180
8 Hb_013420_050 0.0980427089 - - hypothetical protein (mitochondrion) [Vicia faba]
9 Hb_156746_010 0.1079409982 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
10 Hb_003693_040 0.1120227723 - - NADH dehydrogenase subunit 1 [Hevea brasiliensis]
11 Hb_164415_010 0.1132284513 - - conserved hypothetical protein [Ricinus communis]
12 Hb_145745_030 0.1158652617 - - BnaC09g26890D [Brassica napus]
13 Hb_131816_010 0.1176469279 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
14 Hb_000326_100 0.1182004946 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
15 Hb_000959_380 0.1187234913 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
16 Hb_041813_030 0.1201474399 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
17 Hb_077242_020 0.1203966291 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
18 Hb_005054_140 0.1204805087 - - PREDICTED: laccase-4-like [Jatropha curcas]
19 Hb_010053_060 0.1226538192 - - ATP-binding cassette transporter, putative [Ricinus communis]
20 Hb_042463_070 0.1280571727 - - 60S ribosomal protein L16, putative [Ricinus communis]

Gene co-expression network

sample Hb_006040_010 Hb_006040_010 Hb_006040_020 Hb_006040_020 Hb_006040_010--Hb_006040_020 Hb_008085_020 Hb_008085_020 Hb_006040_010--Hb_008085_020 Hb_006040_030 Hb_006040_030 Hb_006040_010--Hb_006040_030 Hb_171685_080 Hb_171685_080 Hb_006040_010--Hb_171685_080 Hb_007645_020 Hb_007645_020 Hb_006040_010--Hb_007645_020 Hb_003688_030 Hb_003688_030 Hb_006040_010--Hb_003688_030 Hb_006040_020--Hb_006040_030 Hb_006040_020--Hb_171685_080 Hb_004987_040 Hb_004987_040 Hb_006040_020--Hb_004987_040 Hb_013420_050 Hb_013420_050 Hb_006040_020--Hb_013420_050 Hb_006040_020--Hb_008085_020 Hb_008085_020--Hb_171685_080 Hb_008085_020--Hb_006040_030 Hb_000326_100 Hb_000326_100 Hb_008085_020--Hb_000326_100 Hb_008085_020--Hb_007645_020 Hb_156746_010 Hb_156746_010 Hb_006040_030--Hb_156746_010 Hb_041813_030 Hb_041813_030 Hb_006040_030--Hb_041813_030 Hb_077242_020 Hb_077242_020 Hb_006040_030--Hb_077242_020 Hb_012163_050 Hb_012163_050 Hb_006040_030--Hb_012163_050 Hb_171685_080--Hb_003688_030 Hb_171685_080--Hb_013420_050 Hb_171685_080--Hb_006040_030 Hb_007645_020--Hb_003688_030 Hb_003693_040 Hb_003693_040 Hb_007645_020--Hb_003693_040 Hb_104509_010 Hb_104509_010 Hb_007645_020--Hb_104509_010 Hb_106850_010 Hb_106850_010 Hb_007645_020--Hb_106850_010 Hb_154980_010 Hb_154980_010 Hb_007645_020--Hb_154980_010 Hb_000959_380 Hb_000959_380 Hb_007645_020--Hb_000959_380 Hb_003688_030--Hb_154980_010 Hb_002835_420 Hb_002835_420 Hb_003688_030--Hb_002835_420 Hb_003688_030--Hb_106850_010 Hb_145745_030 Hb_145745_030 Hb_003688_030--Hb_145745_030 Hb_003688_030--Hb_104509_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.367468 0.31838 0.317079 0.621322 0.0486348 0.799482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0948509 0.325493 1.05865 79.1058

CAGE analysis