Hb_006040_030

Information

Type -
Description -
Location Contig6040: 9208-13202
Sequence    

Annotation

kegg
ID eus:EUTSA_v10001274mg
description hypothetical protein
nr
ID XP_006398027.1
description hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
swissprot
ID P42793
description 60S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana GN=RPL5 PE=2 SV=1
trembl
ID K7KH99
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein l5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006040_030 0.0 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
2 Hb_156746_010 0.0629469637 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
3 Hb_006040_010 0.0778541269 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
4 Hb_006040_020 0.0790333267 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
5 Hb_041813_030 0.0901384131 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
6 Hb_077242_020 0.0954839309 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
7 Hb_012163_050 0.1003839015 - - ATPase subunit [Medicago truncatula]
8 Hb_008085_020 0.1006693298 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
9 Hb_042463_070 0.101475024 - - 60S ribosomal protein L16, putative [Ricinus communis]
10 Hb_013420_050 0.1049674324 - - hypothetical protein (mitochondrion) [Vicia faba]
11 Hb_013420_020 0.1053877506 - - conserved hypothetical protein [Ricinus communis]
12 Hb_171685_080 0.1054490997 - - unknown [Allium cepa]
13 Hb_171685_060 0.1068981037 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
14 Hb_003688_030 0.1165214548 - - NADH dehydrogenase 2-like ORF 180
15 Hb_042463_030 0.1212513721 - - unknown [Lotus japonicus]
16 Hb_007645_020 0.1224244056 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
17 Hb_079902_010 0.1273335655 - - cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
18 Hb_000879_260 0.1300942705 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
19 Hb_004987_040 0.1338176312 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
20 Hb_000373_140 0.1351124257 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]

Gene co-expression network

sample Hb_006040_030 Hb_006040_030 Hb_156746_010 Hb_156746_010 Hb_006040_030--Hb_156746_010 Hb_006040_010 Hb_006040_010 Hb_006040_030--Hb_006040_010 Hb_006040_020 Hb_006040_020 Hb_006040_030--Hb_006040_020 Hb_041813_030 Hb_041813_030 Hb_006040_030--Hb_041813_030 Hb_077242_020 Hb_077242_020 Hb_006040_030--Hb_077242_020 Hb_012163_050 Hb_012163_050 Hb_006040_030--Hb_012163_050 Hb_042463_070 Hb_042463_070 Hb_156746_010--Hb_042463_070 Hb_156746_010--Hb_041813_030 Hb_013420_050 Hb_013420_050 Hb_156746_010--Hb_013420_050 Hb_156746_010--Hb_012163_050 Hb_013420_020 Hb_013420_020 Hb_156746_010--Hb_013420_020 Hb_006040_010--Hb_006040_020 Hb_008085_020 Hb_008085_020 Hb_006040_010--Hb_008085_020 Hb_171685_080 Hb_171685_080 Hb_006040_010--Hb_171685_080 Hb_007645_020 Hb_007645_020 Hb_006040_010--Hb_007645_020 Hb_003688_030 Hb_003688_030 Hb_006040_010--Hb_003688_030 Hb_006040_020--Hb_171685_080 Hb_004987_040 Hb_004987_040 Hb_006040_020--Hb_004987_040 Hb_006040_020--Hb_013420_050 Hb_006040_020--Hb_008085_020 Hb_041813_030--Hb_042463_070 Hb_041813_030--Hb_077242_020 Hb_062192_030 Hb_062192_030 Hb_041813_030--Hb_062192_030 Hb_041813_030--Hb_013420_050 Hb_077242_020--Hb_042463_070 Hb_079902_010 Hb_079902_010 Hb_077242_020--Hb_079902_010 Hb_101462_010 Hb_101462_010 Hb_077242_020--Hb_101462_010 Hb_077242_020--Hb_156746_010 Hb_171685_060 Hb_171685_060 Hb_012163_050--Hb_171685_060 Hb_012163_050--Hb_013420_020 Hb_042463_030 Hb_042463_030 Hb_012163_050--Hb_042463_030 Hb_012163_050--Hb_042463_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0604111 0.264762 0.0695294 0.088532 0.0280083 0.121729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.016667 0.158265 0.106038 13.3362

CAGE analysis