Hb_006040_040

Information

Type -
Description -
Location Contig6040: 13851-14584
Sequence    

Annotation

kegg
ID gmx:102659853
description uncharacterized LOC102659853
nr
ID KHN11224.1
description Putative mitochondrial protein [Glycine soja]
swissprot
ID P92567
description Uncharacterized mitochondrial protein AtMg01410 OS=Arabidopsis thaliana GN=AtMg01410 PE=4 SV=1
trembl
ID K7LVI8
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50690: 5089-13714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006040_040 0.0 - - Putative mitochondrial protein [Glycine soja]
2 Hb_181402_010 0.2845882031 - - PREDICTED: uncharacterized protein LOC104905886 [Beta vulgaris subsp. vulgaris]
3 Hb_000045_060 0.2931471647 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_003717_020 0.3184470674 - - -
5 Hb_004981_010 0.3219977068 - - -
6 Hb_176819_010 0.3512634062 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
7 Hb_002996_020 0.3535974905 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_001021_050 0.3537608318 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_001758_030 0.3569119253 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
10 Hb_017651_010 0.3590310202 - - Ran GTPase binding protein, putative [Ricinus communis]
11 Hb_005214_020 0.3590606168 - - hypothetical protein JCGZ_12886 [Jatropha curcas]
12 Hb_118014_010 0.3616075093 - - PREDICTED: uncharacterized protein LOC104214283 [Nicotiana sylvestris]
13 Hb_055314_010 0.3646689067 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_001303_070 0.3659570996 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X2 [Prunus mume]
15 Hb_065661_010 0.3676741455 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
16 Hb_078901_020 0.3697987938 - - PREDICTED: uncharacterized protein LOC105648117 [Jatropha curcas]
17 Hb_005715_020 0.3748472987 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
18 Hb_088176_010 0.3780859049 - - -
19 Hb_000101_300 0.3787575603 desease resistance Gene Name: NB-ARC hypothetical protein B456_002G046500, partial [Gossypium raimondii]
20 Hb_001854_010 0.3849229543 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_006040_040 Hb_006040_040 Hb_181402_010 Hb_181402_010 Hb_006040_040--Hb_181402_010 Hb_000045_060 Hb_000045_060 Hb_006040_040--Hb_000045_060 Hb_003717_020 Hb_003717_020 Hb_006040_040--Hb_003717_020 Hb_004981_010 Hb_004981_010 Hb_006040_040--Hb_004981_010 Hb_176819_010 Hb_176819_010 Hb_006040_040--Hb_176819_010 Hb_002996_020 Hb_002996_020 Hb_006040_040--Hb_002996_020 Hb_181402_010--Hb_003717_020 Hb_181402_010--Hb_004981_010 Hb_055314_010 Hb_055314_010 Hb_181402_010--Hb_055314_010 Hb_001758_030 Hb_001758_030 Hb_181402_010--Hb_001758_030 Hb_042463_050 Hb_042463_050 Hb_181402_010--Hb_042463_050 Hb_027204_010 Hb_027204_010 Hb_181402_010--Hb_027204_010 Hb_118014_010 Hb_118014_010 Hb_000045_060--Hb_118014_010 Hb_027380_250 Hb_027380_250 Hb_000045_060--Hb_027380_250 Hb_007193_050 Hb_007193_050 Hb_000045_060--Hb_007193_050 Hb_065661_010 Hb_065661_010 Hb_000045_060--Hb_065661_010 Hb_000045_060--Hb_004981_010 Hb_000045_060--Hb_003717_020 Hb_003717_020--Hb_004981_010 Hb_065395_020 Hb_065395_020 Hb_003717_020--Hb_065395_020 Hb_001021_050 Hb_001021_050 Hb_003717_020--Hb_001021_050 Hb_111985_030 Hb_111985_030 Hb_003717_020--Hb_111985_030 Hb_004981_010--Hb_065395_020 Hb_004981_010--Hb_001021_050 Hb_004981_010--Hb_001758_030 Hb_001899_020 Hb_001899_020 Hb_176819_010--Hb_001899_020 Hb_001706_030 Hb_001706_030 Hb_176819_010--Hb_001706_030 Hb_176819_010--Hb_004981_010 Hb_176819_010--Hb_065395_020 Hb_000419_100 Hb_000419_100 Hb_176819_010--Hb_000419_100 Hb_002224_050 Hb_002224_050 Hb_176819_010--Hb_002224_050 Hb_003605_010 Hb_003605_010 Hb_002996_020--Hb_003605_010 Hb_111854_010 Hb_111854_010 Hb_002996_020--Hb_111854_010 Hb_002996_020--Hb_004981_010 Hb_008008_020 Hb_008008_020 Hb_002996_020--Hb_008008_020 Hb_002996_020--Hb_003717_020 Hb_002874_140 Hb_002874_140 Hb_002996_020--Hb_002874_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.21024 0.179506 0 0 0.805458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.552985

CAGE analysis