Hb_006040_090

Information

Type -
Description -
Location Contig6040: 118979-120362
Sequence    

Annotation

kegg
ID ppp:PhpapaCp031
description rbcL; RuBisCO large subunit
nr
ID YP_004327670.1
description ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
swissprot
ID B1NWF8
description Ribulose bisphosphate carboxylase large chain OS=Manihot esculenta GN=rbcL PE=3 SV=1
trembl
ID F2X0C4
description Ribulose bisphosphate carboxylase large chain OS=Hevea brasiliensis GN=rbcL PE=3 SV=1
Gene Ontology
ID GO:0000287
description ribulose- -bisphosphate carboxylase oxygenase large subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006040_090 0.0 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
2 Hb_006495_030 0.0487308508 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
3 Hb_001210_110 0.0518747661 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
4 Hb_003053_090 0.0574024499 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
5 Hb_003053_100 0.059289261 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Jatropha curcas]
6 Hb_002040_070 0.0618028205 - - -
7 Hb_004150_020 0.0634686099 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
8 Hb_020859_010 0.0658824973 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
9 Hb_000853_280 0.0688523314 - - PREDICTED: extensin-like [Jatropha curcas]
10 Hb_000922_110 0.0721548909 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
11 Hb_005656_220 0.0738425717 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
12 Hb_007933_010 0.0745920211 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_015981_010 0.0755851037 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_027751_070 0.0817073089 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
15 Hb_000349_150 0.0817593315 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
16 Hb_159308_010 0.09001475 - - ribosomal protein S4 [Cercidiphyllum japonicum]
17 Hb_000083_010 0.0902362797 - - -
18 Hb_011689_070 0.0902774097 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
19 Hb_000893_040 0.0908473749 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
20 Hb_008489_030 0.0909580629 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]

Gene co-expression network

sample Hb_006040_090 Hb_006040_090 Hb_006495_030 Hb_006495_030 Hb_006040_090--Hb_006495_030 Hb_001210_110 Hb_001210_110 Hb_006040_090--Hb_001210_110 Hb_003053_090 Hb_003053_090 Hb_006040_090--Hb_003053_090 Hb_003053_100 Hb_003053_100 Hb_006040_090--Hb_003053_100 Hb_002040_070 Hb_002040_070 Hb_006040_090--Hb_002040_070 Hb_004150_020 Hb_004150_020 Hb_006040_090--Hb_004150_020 Hb_006495_030--Hb_003053_100 Hb_006495_030--Hb_002040_070 Hb_006495_030--Hb_001210_110 Hb_006495_030--Hb_003053_090 Hb_000853_280 Hb_000853_280 Hb_006495_030--Hb_000853_280 Hb_001210_110--Hb_002040_070 Hb_027751_070 Hb_027751_070 Hb_001210_110--Hb_027751_070 Hb_005656_220 Hb_005656_220 Hb_001210_110--Hb_005656_220 Hb_000083_010 Hb_000083_010 Hb_001210_110--Hb_000083_010 Hb_020859_010 Hb_020859_010 Hb_003053_090--Hb_020859_010 Hb_003053_090--Hb_004150_020 Hb_015981_010 Hb_015981_010 Hb_003053_090--Hb_015981_010 Hb_003053_090--Hb_002040_070 Hb_003053_090--Hb_027751_070 Hb_007933_010 Hb_007933_010 Hb_003053_100--Hb_007933_010 Hb_003053_100--Hb_000853_280 Hb_003053_100--Hb_001210_110 Hb_007741_060 Hb_007741_060 Hb_003053_100--Hb_007741_060 Hb_002040_070--Hb_005656_220 Hb_002040_070--Hb_027751_070 Hb_002040_070--Hb_020859_010 Hb_004150_020--Hb_020859_010 Hb_004150_020--Hb_015981_010 Hb_000893_040 Hb_000893_040 Hb_004150_020--Hb_000893_040 Hb_008489_030 Hb_008489_030 Hb_004150_020--Hb_008489_030 Hb_000977_260 Hb_000977_260 Hb_004150_020--Hb_000977_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.252641 1.26539 49.1351 8.64367 0.182161 0.669844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0472073 0 0 0.23859 430.185

CAGE analysis