Hb_006043_020

Information

Type -
Description -
Location Contig6043: 13563-14828
Sequence    

Annotation

kegg
ID rcu:RCOM_1445950
description hypothetical protein
nr
ID XP_012067326.1
description PREDICTED: GEM-like protein 5 [Jatropha curcas]
swissprot
ID Q9LYV6
description GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1
trembl
ID A0A067L091
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50730: 13537-14863
cDNA
(Sanger)
(ID:Location)		 006_M01.ab1: 13820-14863

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006043_020 0.0 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
2 Hb_002053_030 0.1180431737 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
3 Hb_005976_040 0.1198464468 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
4 Hb_000260_300 0.1226265999 - - calcium binding protein/cast, putative [Ricinus communis]
5 Hb_000345_500 0.1319122009 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
6 Hb_018563_020 0.1347900198 transcription factor TF Family: ERF ethylene-responsive transcription factor 6 [Hevea brasiliensis]
7 Hb_006538_030 0.1387759141 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
8 Hb_000086_610 0.1521584251 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
9 Hb_005496_070 0.1543362788 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
10 Hb_124677_020 0.1612561567 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
11 Hb_000836_160 0.1623188092 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
12 Hb_000532_030 0.1662811061 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
13 Hb_000776_050 0.1670721787 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
14 Hb_032920_040 0.178379681 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
15 Hb_031108_010 0.1798808253 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
16 Hb_001268_060 0.1816865561 - - conserved hypothetical protein [Ricinus communis]
17 Hb_082225_010 0.1828915477 - - DWNN domain isoform 2 [Theobroma cacao]
18 Hb_000805_150 0.1847118101 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
19 Hb_000336_060 0.1875975172 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
20 Hb_001863_270 0.1937402755 - - hypothetical protein JCGZ_15813 [Jatropha curcas]

Gene co-expression network

sample Hb_006043_020 Hb_006043_020 Hb_002053_030 Hb_002053_030 Hb_006043_020--Hb_002053_030 Hb_005976_040 Hb_005976_040 Hb_006043_020--Hb_005976_040 Hb_000260_300 Hb_000260_300 Hb_006043_020--Hb_000260_300 Hb_000345_500 Hb_000345_500 Hb_006043_020--Hb_000345_500 Hb_018563_020 Hb_018563_020 Hb_006043_020--Hb_018563_020 Hb_006538_030 Hb_006538_030 Hb_006043_020--Hb_006538_030 Hb_000776_050 Hb_000776_050 Hb_002053_030--Hb_000776_050 Hb_002053_030--Hb_000345_500 Hb_032920_040 Hb_032920_040 Hb_002053_030--Hb_032920_040 Hb_000373_250 Hb_000373_250 Hb_002053_030--Hb_000373_250 Hb_001863_270 Hb_001863_270 Hb_002053_030--Hb_001863_270 Hb_005976_040--Hb_018563_020 Hb_005976_040--Hb_002053_030 Hb_005976_040--Hb_000260_300 Hb_000836_160 Hb_000836_160 Hb_005976_040--Hb_000836_160 Hb_005496_070 Hb_005496_070 Hb_005976_040--Hb_005496_070 Hb_124677_020 Hb_124677_020 Hb_000260_300--Hb_124677_020 Hb_155946_030 Hb_155946_030 Hb_000260_300--Hb_155946_030 Hb_000260_300--Hb_018563_020 Hb_000336_060 Hb_000336_060 Hb_000260_300--Hb_000336_060 Hb_000345_500--Hb_000776_050 Hb_000345_500--Hb_006538_030 Hb_000069_330 Hb_000069_330 Hb_000345_500--Hb_000069_330 Hb_000345_500--Hb_001863_270 Hb_000086_610 Hb_000086_610 Hb_018563_020--Hb_000086_610 Hb_018563_020--Hb_000836_160 Hb_018563_020--Hb_006538_030 Hb_000532_030 Hb_000532_030 Hb_006538_030--Hb_000532_030 Hb_006538_030--Hb_000836_160 Hb_006538_030--Hb_000086_610 Hb_004787_100 Hb_004787_100 Hb_006538_030--Hb_004787_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27353 292.43 111 96.6752 1.56247 0.227056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.2575 38.7038 13.6923 14.2206 9.67924

CAGE analysis