Hb_006043_030

Information

Type -
Description -
Location Contig6043: 17912-21795
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID YP_008992013.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID V9QF33
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0016787
description orf i polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006043_030 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_005401_010 0.1536890053 - - -
3 Hb_001205_170 0.1811932241 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
4 Hb_003106_250 0.1978387297 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
5 Hb_007507_030 0.1999744897 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_101778_010 0.2050157754 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_003527_020 0.2054901908 - - BnaC01g27150D [Brassica napus]
8 Hb_042141_010 0.2085691991 - - -
9 Hb_117001_010 0.2098663189 - - -
10 Hb_130579_050 0.210481476 - - hypothetical protein JCGZ_25577 [Jatropha curcas]
11 Hb_004880_120 0.2199782898 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
12 Hb_004884_210 0.2204659065 - - PREDICTED: mitoferrin-like [Jatropha curcas]
13 Hb_062503_010 0.2204842066 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_045785_010 0.2268235108 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
15 Hb_005183_060 0.227662023 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
16 Hb_002025_240 0.2308365159 - - -
17 Hb_001229_030 0.234058093 - - PREDICTED: uncharacterized protein LOC104783713 [Camelina sativa]
18 Hb_063869_010 0.2346797734 - - JHL22C18.10 [Jatropha curcas]
19 Hb_011344_150 0.2369982276 - - polyprotein [Citrus endogenous pararetrovirus]
20 Hb_172426_010 0.2449726625 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]

Gene co-expression network

sample Hb_006043_030 Hb_006043_030 Hb_005401_010 Hb_005401_010 Hb_006043_030--Hb_005401_010 Hb_001205_170 Hb_001205_170 Hb_006043_030--Hb_001205_170 Hb_003106_250 Hb_003106_250 Hb_006043_030--Hb_003106_250 Hb_007507_030 Hb_007507_030 Hb_006043_030--Hb_007507_030 Hb_101778_010 Hb_101778_010 Hb_006043_030--Hb_101778_010 Hb_003527_020 Hb_003527_020 Hb_006043_030--Hb_003527_020 Hb_001769_130 Hb_001769_130 Hb_005401_010--Hb_001769_130 Hb_117001_010 Hb_117001_010 Hb_005401_010--Hb_117001_010 Hb_005401_010--Hb_003527_020 Hb_000671_140 Hb_000671_140 Hb_005401_010--Hb_000671_140 Hb_042463_050 Hb_042463_050 Hb_005401_010--Hb_042463_050 Hb_001999_050 Hb_001999_050 Hb_001205_170--Hb_001999_050 Hb_004884_210 Hb_004884_210 Hb_001205_170--Hb_004884_210 Hb_007575_020 Hb_007575_020 Hb_001205_170--Hb_007575_020 Hb_172426_010 Hb_172426_010 Hb_001205_170--Hb_172426_010 Hb_027337_050 Hb_027337_050 Hb_001205_170--Hb_027337_050 Hb_034013_010 Hb_034013_010 Hb_001205_170--Hb_034013_010 Hb_003106_250--Hb_004884_210 Hb_001229_030 Hb_001229_030 Hb_003106_250--Hb_001229_030 Hb_004976_080 Hb_004976_080 Hb_003106_250--Hb_004976_080 Hb_001405_230 Hb_001405_230 Hb_003106_250--Hb_001405_230 Hb_011472_050 Hb_011472_050 Hb_003106_250--Hb_011472_050 Hb_000072_240 Hb_000072_240 Hb_003106_250--Hb_000072_240 Hb_007507_030--Hb_101778_010 Hb_062503_010 Hb_062503_010 Hb_007507_030--Hb_062503_010 Hb_042141_010 Hb_042141_010 Hb_007507_030--Hb_042141_010 Hb_005183_060 Hb_005183_060 Hb_007507_030--Hb_005183_060 Hb_000224_250 Hb_000224_250 Hb_007507_030--Hb_000224_250 Hb_063869_010 Hb_063869_010 Hb_007507_030--Hb_063869_010 Hb_101778_010--Hb_062503_010 Hb_101778_010--Hb_005183_060 Hb_101778_010--Hb_000224_250 Hb_101778_010--Hb_042141_010 Hb_002876_010 Hb_002876_010 Hb_101778_010--Hb_002876_010 Hb_000959_050 Hb_000959_050 Hb_003527_020--Hb_000959_050 Hb_000060_130 Hb_000060_130 Hb_003527_020--Hb_000060_130 Hb_003527_020--Hb_062503_010 Hb_003527_020--Hb_005183_060 Hb_045785_010 Hb_045785_010 Hb_003527_020--Hb_045785_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00522617 0.0662151 0.0158646 0 0 0.00456218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00369255 0.0797872

CAGE analysis