Hb_006052_030

Information

Type -
Description -
Location Contig6052: 13672-19088
Sequence    

Annotation

kegg
ID rcu:RCOM_0489400
description heat shock protein binding protein, putative
nr
ID XP_012089815.1
description PREDICTED: dnaJ protein ERDJ3A [Jatropha curcas]
swissprot
ID Q9SR96
description DnaJ protein ERDJ3A OS=Arabidopsis thaliana GN=ERDJ3A PE=1 SV=1
trembl
ID A0A067JTJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00451 PE=4 SV=1
Gene Ontology
ID GO:0005788
description dnaj protein erdj3a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50735: 13691-19145 , PASA_asmbl_50736: 15819-16100 , PASA_asmbl_50737: 15227-15692
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006052_030 0.0 - - PREDICTED: dnaJ protein ERDJ3A [Jatropha curcas]
2 Hb_000958_070 0.1095013794 - - hypothetical protein PRUPE_ppa007681mg [Prunus persica]
3 Hb_000334_170 0.1212636774 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42 isoform X1 [Jatropha curcas]
4 Hb_001232_100 0.1242236204 - - Heat shock 70 kDa protein, putative [Ricinus communis]
5 Hb_000260_560 0.1273282201 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
6 Hb_022250_100 0.1277661849 - - calnexin, putative [Ricinus communis]
7 Hb_000041_300 0.1337076737 transcription factor TF Family: SNF2 PREDICTED: uncharacterized ATP-dependent helicase C23E6.02 isoform X2 [Jatropha curcas]
8 Hb_011931_060 0.1406197359 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
9 Hb_002495_060 0.1407721492 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000479_170 0.1445264908 - - chaperone clpb, putative [Ricinus communis]
11 Hb_002368_070 0.1459712677 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
12 Hb_004738_110 0.1472135655 - - phosphoenolpyruvate carboxylase [Manihot esculenta]
13 Hb_000454_190 0.1555730934 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
14 Hb_006355_020 0.1563948919 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
15 Hb_006846_080 0.1590201494 - - calnexin, putative [Ricinus communis]
16 Hb_001411_030 0.1600762319 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
17 Hb_002233_130 0.1611915401 - - transporter, putative [Ricinus communis]
18 Hb_002276_070 0.1631533332 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
19 Hb_000175_630 0.1644645281 - - PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Jatropha curcas]
20 Hb_004631_150 0.1645846913 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_006052_030 Hb_006052_030 Hb_000958_070 Hb_000958_070 Hb_006052_030--Hb_000958_070 Hb_000334_170 Hb_000334_170 Hb_006052_030--Hb_000334_170 Hb_001232_100 Hb_001232_100 Hb_006052_030--Hb_001232_100 Hb_000260_560 Hb_000260_560 Hb_006052_030--Hb_000260_560 Hb_022250_100 Hb_022250_100 Hb_006052_030--Hb_022250_100 Hb_000041_300 Hb_000041_300 Hb_006052_030--Hb_000041_300 Hb_000958_070--Hb_000260_560 Hb_011344_020 Hb_011344_020 Hb_000958_070--Hb_011344_020 Hb_004631_150 Hb_004631_150 Hb_000958_070--Hb_004631_150 Hb_002233_130 Hb_002233_130 Hb_000958_070--Hb_002233_130 Hb_162275_040 Hb_162275_040 Hb_000958_070--Hb_162275_040 Hb_006355_020 Hb_006355_020 Hb_000958_070--Hb_006355_020 Hb_000334_170--Hb_000260_560 Hb_001040_070 Hb_001040_070 Hb_000334_170--Hb_001040_070 Hb_000334_170--Hb_001232_100 Hb_000175_630 Hb_000175_630 Hb_000334_170--Hb_000175_630 Hb_000264_230 Hb_000264_230 Hb_000334_170--Hb_000264_230 Hb_000334_170--Hb_000041_300 Hb_001232_100--Hb_000260_560 Hb_006618_040 Hb_006618_040 Hb_001232_100--Hb_006618_040 Hb_000573_060 Hb_000573_060 Hb_001232_100--Hb_000573_060 Hb_000329_100 Hb_000329_100 Hb_001232_100--Hb_000329_100 Hb_000260_560--Hb_002233_130 Hb_000260_560--Hb_000573_060 Hb_000086_150 Hb_000086_150 Hb_000260_560--Hb_000086_150 Hb_001244_150 Hb_001244_150 Hb_000260_560--Hb_001244_150 Hb_009486_080 Hb_009486_080 Hb_000260_560--Hb_009486_080 Hb_022250_100--Hb_006355_020 Hb_022250_100--Hb_000041_300 Hb_000684_350 Hb_000684_350 Hb_022250_100--Hb_000684_350 Hb_022250_100--Hb_000958_070 Hb_005250_010 Hb_005250_010 Hb_022250_100--Hb_005250_010 Hb_000562_050 Hb_000562_050 Hb_022250_100--Hb_000562_050 Hb_000041_300--Hb_000175_630 Hb_004225_040 Hb_004225_040 Hb_000041_300--Hb_004225_040 Hb_026053_040 Hb_026053_040 Hb_000041_300--Hb_026053_040 Hb_000261_050 Hb_000261_050 Hb_000041_300--Hb_000261_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.81858 23.1871 25.2181 28.3958 61.128 26.9368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0756 7.29855 13.0865 17.1092 75.54

CAGE analysis